Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL645939.1-201ENST00000453429 797 ntBASIC4.09□□□□□ -1.75
MSX2P35548 AC083982.1-201ENST00000485679 344 ntBASIC4.09□□□□□ -1.75
MSX2P35548 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.09□□□□□ -1.75
MSX2P35548 RANP9-201ENST00000519957 271 ntBASIC4.09□□□□□ -1.75
MSX2P35548 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 AC110588.1-201ENST00000559699 137 ntBASIC4.09□□□□□ -1.75
MSX2P35548 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.09□□□□□ -1.75
MSX2P35548 HMGN2P28-201ENST00000606102 262 ntBASIC4.09□□□□□ -1.75
MSX2P35548 AC090425.1-201ENST00000610007 140 ntBASIC4.09□□□□□ -1.75
MSX2P35548 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
MSX2P35548 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
MSX2P35548 AC022418.1-201ENST00000624118 445 ntBASIC4.09□□□□□ -1.75
MSX2P35548 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.09□□□□□ -1.75
MSX2P35548 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
MSX2P35548 GABPAP-201ENST00000419271 1356 ntBASIC4.09□□□□□ -1.75
MSX2P35548 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
MSX2P35548 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
MSX2P35548 MTND5P30-201ENST00000452896 1731 ntBASIC4.09□□□□□ -1.76
MSX2P35548 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX2P35548 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX2P35548 RNU6-263P-201ENST00000363811 107 ntBASIC4.08□□□□□ -1.76
MSX2P35548 MIR450B-201ENST00000401182 78 ntBASIC4.08□□□□□ -1.76
MSX2P35548 RPL21P24-201ENST00000413752 448 ntBASIC4.08□□□□□ -1.76
MSX2P35548 RPL7P10-201ENST00000417407 739 ntBASIC4.08□□□□□ -1.76
MSX2P35548 CALM2P2-201ENST00000428512 440 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.08□□□□□ -1.76
MSX2P35548 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.08□□□□□ -1.76
MSX2P35548 RPL7P28-201ENST00000437739 740 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AL049641.1-201ENST00000441055 1948 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.08□□□□□ -1.76
MSX2P35548 AL731563.1-201ENST00000442202 214 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.08□□□□□ -1.76
MSX2P35548 HMGN2P21-201ENST00000447764 270 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC104058.1-201ENST00000448028 297 ntBASIC4.08□□□□□ -1.76
MSX2P35548 BTF3P15-201ENST00000455606 336 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.08□□□□□ -1.76
MSX2P35548 MTATP8P1-201ENST00000467115 207 ntBASIC4.08□□□□□ -1.76
MSX2P35548 RN7SL432P-201ENST00000484057 298 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC007686.1-201ENST00000488511 463 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC097473.1-201ENST00000508142 408 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.08□□□□□ -1.76
MSX2P35548 Vault.1-201ENST00000516474 102 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.08□□□□□ -1.76
MSX2P35548 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.08□□□□□ -1.76
MSX2P35548 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.08□□□□□ -1.76
MSX2P35548 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX2P35548 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.08□□□□□ -1.76
MSX2P35548 RANP3-201ENST00000530970 276 ntBASIC4.08□□□□□ -1.76
MSX2P35548 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.08□□□□□ -1.76
MSX2P35548 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.08□□□□□ -1.76
MSX2P35548 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.08□□□□□ -1.76
MSX2P35548 AC005255.1-201ENST00000593748 216 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC005014.2-201ENST00000607795 599 ntBASIC4.08□□□□□ -1.76
MSX2P35548 SNHG22-203ENST00000617833 660 ntBASIC4.08□□□□□ -1.76
MSX2P35548 MIR4727-201ENST00000622232 55 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AL445363.3-201ENST00000623080 671 ntBASIC4.08□□□□□ -1.76
MSX2P35548 AC091953.3-201ENST00000623220 236 ntBASIC4.08□□□□□ -1.76
MSX2P35548 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSX2P35548 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
MSX2P35548 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.08□□□□□ -1.76
MSX2P35548 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX2P35548 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX2P35548 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
MSX2P35548 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX2P35548 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.07□□□□□ -1.76
MSX2P35548 RNU6-1318P-201ENST00000365389 103 ntBASIC4.07□□□□□ -1.76
MSX2P35548 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 RNU6-946P-201ENST00000383878 107 ntBASIC4.07□□□□□ -1.76
MSX2P35548 Y_RNA.399-201ENST00000383955 105 ntBASIC4.07□□□□□ -1.76
MSX2P35548 RNU6-890P-201ENST00000384121 107 ntBASIC4.07□□□□□ -1.76
MSX2P35548 Y_RNA.463-201ENST00000384271 102 ntBASIC4.07□□□□□ -1.76
MSX2P35548 RNU6-328P-201ENST00000390887 106 ntBASIC4.07□□□□□ -1.76
MSX2P35548 SNORA16.2-201ENST00000390991 127 ntBASIC4.07□□□□□ -1.76
MSX2P35548 RNU4-78P-201ENST00000410940 126 ntBASIC4.07□□□□□ -1.76
MSX2P35548 UBE2FP1-201ENST00000416536 447 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC114482.1-201ENST00000418010 247 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 AC244098.2-201ENST00000422068 99 ntBASIC4.07□□□□□ -1.76
MSX2P35548 SNAP23P1-201ENST00000433229 246 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC006463.2-201ENST00000473326 348 ntBASIC4.07□□□□□ -1.76
MSX2P35548 IGLV2-34-201ENST00000490007 283 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AP002812.1-201ENST00000495378 474 ntBASIC4.07□□□□□ -1.76
MSX2P35548 RPL23AP55-201ENST00000498163 452 ntBASIC4.07□□□□□ -1.76
MSX2P35548 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
MSX2P35548 RNU6-123P-201ENST00000516163 102 ntBASIC4.07□□□□□ -1.76
MSX2P35548 RNU6-1016P-201ENST00000516689 94 ntBASIC4.07□□□□□ -1.76
MSX2P35548 RNU6-794P-201ENST00000517261 64 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.07□□□□□ -1.76
MSX2P35548 CR383656.7-201ENST00000548164 174 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.07□□□□□ -1.76
MSX2P35548 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.07□□□□□ -1.76
MSX2P35548 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 MIR5692C1-201ENST00000585309 91 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 AC073539.2-201ENST00000597113 165 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms