Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXA1P55317 RPL27AP8-201ENST00000424277 446 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXA1P55317 AL121890.1-201ENST00000435457 205 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 MTND2P20-201ENST00000440805 661 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 AC104164.3-201ENST00000467363 1258 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 RPL31P60-201ENST00000478450 367 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.95□□□□□ -2.1
FOXA1P55317 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 MTCYBP17-201ENST00000503579 789 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 AC109464.2-201ENST00000510242 943 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXA1P55317 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 MTCO1P47-201ENST00000523889 1271 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 AC118942.1-201ENST00000529674 1035 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXA1P55317 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXA1P55317 AC090079.2-201ENST00000575289 768 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 MIR5089-201ENST00000580047 84 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 VN1R83P-201ENST00000595685 445 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 BNIP3P31-201ENST00000604515 566 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 HSPE1P7-201ENST00000604681 321 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AP000254.1-201ENST00000609934 520 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA1P55317 MIR6873-201ENST00000622788 63 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 MTND4P1-201ENST00000457501 1466 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
FOXA1P55317 DEFB108F-201ENST00000344638 222 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 RPS3AP24-201ENST00000407896 734 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 RN7SKP32-201ENST00000410167 303 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXA1P55317 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC1.94□□□□□ -2.1
FOXA1P55317 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXA1P55317 THAP5P1-201ENST00000439089 262 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 IPO7P1-201ENST00000442031 636 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AL513124.1-201ENST00000450410 614 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AC092798.1-201ENST00000458542 409 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AL049714.1-201ENST00000466686 347 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AC114981.1-201ENST00000503897 678 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 YWHAEP4-201ENST00000505390 198 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
FOXA1P55317 AL359273.1-201ENST00000510918 627 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 RAC1P5-201ENST00000512182 576 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AC008549.1-201ENST00000512900 643 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AC093677.1-201ENST00000514414 678 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 RNU6-276P-201ENST00000516114 96 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXA1P55317 CASP1P1-201ENST00000526345 212 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXA1P55317 DEFB108D-201ENST00000527787 222 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AP000867.2-201ENST00000532468 320 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC1.94□□□□□ -2.1
FOXA1P55317 MTND3P13-201ENST00000574391 343 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AC011260.1-201ENST00000578420 472 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC1.94□□□□□ -2.1
FOXA1P55317 AP000720.1-201ENST00000625091 483 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 AL138960.2-201ENST00000625145 535 ntBASIC1.94□□□□□ -2.1
FOXA1P55317 RNU6-1122P-201ENST00000384449 107 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
FOXA1P55317 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
FOXA1P55317 SNORA3.2-201ENST00000408221 125 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 RNU2-2P-201ENST00000410396 191 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 RPL17P12-201ENST00000413391 526 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 NPM1P11-201ENST00000417106 855 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA1P55317 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.93□□□□□ -2.1
FOXA1P55317 AC092573.2-201ENST00000434546 243 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
FOXA1P55317 RPL26P6-201ENST00000440913 438 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 SNRPGP6-201ENST00000451124 220 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 OFD1P7Y-201ENST00000454643 1155 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA1P55317 RPL18AP17-201ENST00000455326 198 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC104982.1-201ENST00000478775 574 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 MTAPP1-201ENST00000489154 819 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC104090.1-201ENST00000506341 1171 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC113347.3-201ENST00000509113 148 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC1.93□□□□□ -2.1
FOXA1P55317 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA1P55317 RNU6-583P-201ENST00000516012 92 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA1P55317 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA1P55317 AC105224.1-201ENST00000587055 421 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AL390208.1-201ENST00000605885 644 ntBASIC1.93□□□□□ -2.1
FOXA1P55317 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.93□□□□□ -2.1
FOXA1P55317 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA1P55317 AC245517.5-201ENST00000611529 162 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms