Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC5.17□□□□□ -1.58
LIG1P18858 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
LIG1P18858 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LIG1P18858 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIG1P18858 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIG1P18858 MIR448-201ENST00000362131 111 ntBASIC5.16□□□□□ -1.58
LIG1P18858 SET-203ENST00000372688 801 ntTSL 2 BASIC5.16□□□□□ -1.58
LIG1P18858 SNORA56-201ENST00000383966 129 ntBASIC5.16□□□□□ -1.58
LIG1P18858 RNU6-637P-201ENST00000384050 107 ntBASIC5.16□□□□□ -1.58
LIG1P18858 MIR192-201ENST00000384915 110 ntBASIC5.16□□□□□ -1.58
LIG1P18858 RN7SKP159-201ENST00000410657 292 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AC119751.6-201ENST00000416712 186 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC5.16□□□□□ -1.58
LIG1P18858 AC093151.1-201ENST00000427711 313 ntBASIC5.16□□□□□ -1.58
LIG1P18858 RPL23AP69-201ENST00000431134 458 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC5.16□□□□□ -1.58
LIG1P18858 HMGB1P12-201ENST00000438594 598 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC5.16□□□□□ -1.58
LIG1P18858 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.16□□□□□ -1.58
LIG1P18858 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.16□□□□□ -1.58
LIG1P18858 AC006463.2-201ENST00000473326 348 ntBASIC5.16□□□□□ -1.58
LIG1P18858 RPL23AP55-201ENST00000498163 452 ntBASIC5.16□□□□□ -1.58
LIG1P18858 RBBP4P6-201ENST00000508098 202 ntBASIC5.16□□□□□ -1.58
LIG1P18858 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC5.16□□□□□ -1.58
LIG1P18858 AC007016.1-201ENST00000512110 244 ntBASIC5.16□□□□□ -1.58
LIG1P18858 RNU6-1069P-201ENST00000516612 133 ntBASIC5.16□□□□□ -1.58
LIG1P18858 Y_RNA.708-201ENST00000516950 96 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AC008694.2-201ENST00000517591 306 ntBASIC5.16□□□□□ -1.58
LIG1P18858 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.16□□□□□ -1.58
LIG1P18858 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.16□□□□□ -1.58
LIG1P18858 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC5.16□□□□□ -1.58
LIG1P18858 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC5.16□□□□□ -1.58
LIG1P18858 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.16□□□□□ -1.58
LIG1P18858 AC106782.4-201ENST00000568264 210 ntBASIC5.16□□□□□ -1.58
LIG1P18858 MTND6P33-201ENST00000571794 183 ntBASIC5.16□□□□□ -1.58
LIG1P18858 BNIP3P16-201ENST00000589779 534 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AL670379.6-201ENST00000603753 252 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AC008162.1-201ENST00000604718 254 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AL670379.1-201ENST00000604752 252 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AL670379.5-201ENST00000605253 252 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AL670379.8-201ENST00000605353 252 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AL670379.7-201ENST00000605823 252 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AC009570.1-201ENST00000609599 745 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AC006157.1-201ENST00000611750 366 ntBASIC5.16□□□□□ -1.58
LIG1P18858 MIR6128-201ENST00000615528 109 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AP000346.3-201ENST00000622821 210 ntBASIC5.16□□□□□ -1.58
LIG1P18858 AC092608.2-201ENST00000624427 218 ntBASIC5.16□□□□□ -1.58
LIG1P18858 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LIG1P18858 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIG1P18858 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
LIG1P18858 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.15□□□□□ -1.58
LIG1P18858 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.15□□□□□ -1.58
LIG1P18858 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.15□□□□□ -1.58
LIG1P18858 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
LIG1P18858 RNU6-490P-201ENST00000362985 107 ntBASIC5.15□□□□□ -1.59
LIG1P18858 RNA5SP22-201ENST00000365393 109 ntBASIC5.15□□□□□ -1.59
LIG1P18858 RNA5SP167-201ENST00000365461 116 ntBASIC5.15□□□□□ -1.59
LIG1P18858 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LIG1P18858 RNU1-44P-201ENST00000384453 163 ntBASIC5.15□□□□□ -1.59
LIG1P18858 Y_RNA.574-201ENST00000384766 95 ntBASIC5.15□□□□□ -1.59
LIG1P18858 AL445189.1-201ENST00000405722 338 ntBASIC5.15□□□□□ -1.59
LIG1P18858 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LIG1P18858 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG1P18858 RPS15AP40-201ENST00000419621 391 ntBASIC5.15□□□□□ -1.59
LIG1P18858 AL139095.3-201ENST00000419672 1203 ntBASIC5.15□□□□□ -1.59
LIG1P18858 AC093106.2-201ENST00000428212 385 ntBASIC5.15□□□□□ -1.59
LIG1P18858 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.15□□□□□ -1.59
LIG1P18858 AC009963.2-201ENST00000453431 138 ntBASIC5.15□□□□□ -1.59
LIG1P18858 HMGB3P30-201ENST00000457863 606 ntBASIC5.15□□□□□ -1.59
LIG1P18858 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG1P18858 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC5.15□□□□□ -1.59
LIG1P18858 AP002812.1-201ENST00000495378 474 ntBASIC5.15□□□□□ -1.59
LIG1P18858 MTCO3P44-201ENST00000510977 541 ntBASIC5.15□□□□□ -1.59
LIG1P18858 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC5.15□□□□□ -1.59
LIG1P18858 MIR5692C1-201ENST00000585309 91 ntBASIC5.15□□□□□ -1.59
LIG1P18858 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.15□□□□□ -1.59
LIG1P18858 AL160290.3-201ENST00000604869 165 ntBASIC5.15□□□□□ -1.59
LIG1P18858 U2.17-201ENST00000611454 95 ntBASIC5.15□□□□□ -1.59
LIG1P18858 MIR6780A-201ENST00000615089 68 ntBASIC5.15□□□□□ -1.59
LIG1P18858 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
LIG1P18858 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
LIG1P18858 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.15□□□□□ -1.59
LIG1P18858 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.15□□□□□ -1.59
LIG1P18858 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
LIG1P18858 AL137003.2-201ENST00000606924 2538 ntBASIC5.15□□□□□ -1.59
LIG1P18858 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG1P18858 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG1P18858 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
LIG1P18858 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.14□□□□□ -1.59
LIG1P18858 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC5.14□□□□□ -1.59
LIG1P18858 AC079741.1-201ENST00000321498 212 ntBASIC5.14□□□□□ -1.59
LIG1P18858 SNORA71.2-201ENST00000364941 134 ntBASIC5.14□□□□□ -1.59
LIG1P18858 RNU6-946P-201ENST00000383878 107 ntBASIC5.14□□□□□ -1.59
LIG1P18858 Y_RNA.455-201ENST00000384230 98 ntBASIC5.14□□□□□ -1.59
LIG1P18858 RNA5SP332-201ENST00000391063 115 ntBASIC5.14□□□□□ -1.59
LIG1P18858 ENSAP1-201ENST00000392855 326 ntBASIC5.14□□□□□ -1.59
LIG1P18858 AL583834.1-201ENST00000406943 343 ntBASIC5.14□□□□□ -1.59
LIG1P18858 RN7SKP267-201ENST00000410381 285 ntBASIC5.14□□□□□ -1.59
LIG1P18858 Y_RNA.625-201ENST00000411256 107 ntBASIC5.14□□□□□ -1.59
LIG1P18858 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms