Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC010285.1-201ENST00000470580 392 ntBASIC3.38□□□□□ -1.87
CUX2O14529 RPL23AP55-201ENST00000498163 452 ntBASIC3.38□□□□□ -1.87
CUX2O14529 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.38□□□□□ -1.87
CUX2O14529 SNORA48.10-201ENST00000516965 160 ntBASIC3.38□□□□□ -1.87
CUX2O14529 DEFB130C-202ENST00000530001 230 ntBASIC3.38□□□□□ -1.87
CUX2O14529 AC087241.2-201ENST00000535801 324 ntBASIC3.38□□□□□ -1.87
CUX2O14529 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.38□□□□□ -1.87
CUX2O14529 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.38□□□□□ -1.87
CUX2O14529 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.38□□□□□ -1.87
CUX2O14529 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.38□□□□□ -1.87
CUX2O14529 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.38□□□□□ -1.87
CUX2O14529 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.38□□□□□ -1.87
CUX2O14529 AL138960.2-201ENST00000625145 535 ntBASIC3.38□□□□□ -1.87
CUX2O14529 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.38□□□□□ -1.87
CUX2O14529 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.38□□□□□ -1.87
CUX2O14529 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CUX2O14529 GDI2P1-201ENST00000429312 1336 ntBASIC3.38□□□□□ -1.87
CUX2O14529 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.37□□□□□ -1.87
CUX2O14529 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
CUX2O14529 ICE2P2-201ENST00000483823 2787 ntBASIC3.37□□□□□ -1.87
CUX2O14529 RNU6-989P-201ENST00000362756 107 ntBASIC3.37□□□□□ -1.87
CUX2O14529 Y_RNA.578-201ENST00000390903 88 ntBASIC3.37□□□□□ -1.87
CUX2O14529 RNU6-821P-201ENST00000390995 107 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.37□□□□□ -1.87
CUX2O14529 TOMM22P1-201ENST00000418578 312 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.37□□□□□ -1.87
CUX2O14529 HMGB1P12-201ENST00000438594 598 ntBASIC3.37□□□□□ -1.87
CUX2O14529 MTCYBP31-201ENST00000438855 1122 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.37□□□□□ -1.87
CUX2O14529 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.37□□□□□ -1.87
CUX2O14529 AP005660.1-201ENST00000522972 293 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AP001189.2-201ENST00000527320 189 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AC011604.1-201ENST00000545978 196 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.37□□□□□ -1.87
CUX2O14529 XIAPP1-201ENST00000603162 600 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AC006329.2-201ENST00000611491 394 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AC018755.4-201ENST00000619715 454 ntBASIC3.37□□□□□ -1.87
CUX2O14529 AP003485.1-201ENST00000625093 753 ntBASIC3.37□□□□□ -1.87
CUX2O14529 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 RNU6-50P-201ENST00000362356 103 ntBASIC3.36□□□□□ -1.87
CUX2O14529 RNU6-224P-201ENST00000384055 107 ntBASIC3.36□□□□□ -1.87
CUX2O14529 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 USP9YP21-201ENST00000420603 432 ntBASIC3.36□□□□□ -1.87
CUX2O14529 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.36□□□□□ -1.87
CUX2O14529 HMGN1P33-201ENST00000432945 451 ntBASIC3.36□□□□□ -1.87
CUX2O14529 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.36□□□□□ -1.87
CUX2O14529 AC087190.1-201ENST00000484462 480 ntBASIC3.36□□□□□ -1.87
CUX2O14529 RPS29P11-201ENST00000496507 171 ntBASIC3.36□□□□□ -1.87
CUX2O14529 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.36□□□□□ -1.87
CUX2O14529 AC006390.1-201ENST00000508068 283 ntBASIC3.36□□□□□ -1.87
CUX2O14529 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CUX2O14529 SNORA31.20-201ENST00000517111 133 ntBASIC3.36□□□□□ -1.87
CUX2O14529 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.36□□□□□ -1.87
CUX2O14529 SULT1C2P1-202ENST00000562418 459 ntBASIC3.36□□□□□ -1.87
CUX2O14529 ZNF192P1-203ENST00000565888 810 ntBASIC3.36□□□□□ -1.87
CUX2O14529 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.36□□□□□ -1.87
CUX2O14529 MIR3912-201ENST00000577566 105 ntBASIC3.36□□□□□ -1.87
CUX2O14529 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.36□□□□□ -1.87
CUX2O14529 AC005332.6-201ENST00000613178 446 ntBASIC3.36□□□□□ -1.87
CUX2O14529 AC009318.4-201ENST00000620496 486 ntBASIC3.36□□□□□ -1.87
CUX2O14529 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 AC068700.1-201ENST00000565862 3754 ntBASIC3.36□□□□□ -1.87
CUX2O14529 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CUX2O14529 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 Z82209.1-201ENST00000422141 2135 ntBASIC3.36□□□□□ -1.87
CUX2O14529 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
CUX2O14529 SNORD114-22-201ENST00000365423 72 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AC016769.3-201ENST00000396562 315 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AL079342.2-201ENST00000403367 482 ntBASIC3.35□□□□□ -1.87
CUX2O14529 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.35□□□□□ -1.87
CUX2O14529 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.35□□□□□ -1.87
CUX2O14529 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.35□□□□□ -1.87
CUX2O14529 MTCO1P3-201ENST00000429327 192 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.35□□□□□ -1.87
CUX2O14529 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.35□□□□□ -1.87
CUX2O14529 SNRPGP3-201ENST00000469405 227 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AC010460.2-201ENST00000509054 677 ntBASIC3.35□□□□□ -1.87
CUX2O14529 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.35□□□□□ -1.87
CUX2O14529 AC010376.1-201ENST00000522101 334 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AC016957.1-201ENST00000534895 309 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.35□□□□□ -1.87
CUX2O14529 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.35□□□□□ -1.87
CUX2O14529 AC006963.1-201ENST00000624003 1052 ntBASIC3.35□□□□□ -1.87
CUX2O14529 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.35□□□□□ -1.87
CUX2O14529 AC106858.1-201ENST00000637497 429 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AC244517.1-201ENST00000606030 2086 ntBASIC3.35□□□□□ -1.87
CUX2O14529 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CUX2O14529 MTCO1P56-201ENST00000401674 224 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AL355143.1-201ENST00000407101 841 ntBASIC3.35□□□□□ -1.87
CUX2O14529 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.35□□□□□ -1.87
CUX2O14529 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.35□□□□□ -1.87
CUX2O14529 TPMTP3-201ENST00000411928 735 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.35□□□□□ -1.87
CUX2O14529 RPS24P6-201ENST00000452670 400 ntBASIC3.35□□□□□ -1.87
CUX2O14529 PNPLA4P1-201ENST00000458328 305 ntBASIC3.35□□□□□ -1.87
CUX2O14529 AC092757.1-201ENST00000467293 467 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms