Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL139276.1-201ENST00000311910 1001 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 RN7SKP44-201ENST00000363602 316 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.395-201ENST00000383945 109 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-639P-201ENST00000384074 107 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 MIR490-201ENST00000384865 128 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AC245054.2-201ENST00000415639 319 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AL353597.2-202ENST00000434901 373 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 FTH1P1-201ENST00000437933 532 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 RAC1P7-201ENST00000445367 377 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 IGKV1OR-3-201ENST00000446944 348 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 RPS29P15-201ENST00000458329 171 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 VN1R17P-201ENST00000472048 1090 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AC012181.1-201ENST00000479895 423 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AC020893.1-201ENST00000502452 580 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AC092436.1-201ENST00000506450 503 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AC074250.1-201ENST00000511117 192 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-864P-201ENST00000516256 108 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AL355836.1-201ENST00000555951 870 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 COX6CP3-201ENST00000580869 223 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AL158196.1-201ENST00000616786 434 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AL591424.2-201ENST00000617023 128 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 AL138713.1-201ENST00000624026 2130 ntBASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.04□□□□□ -1.6
USHBP1Q8N6Y0 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 SNORA62.1-201ENST00000364287 154 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-522P-201ENST00000364497 107 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.339-201ENST00000365325 102 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.414-201ENST00000384011 101 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 MIR491-201ENST00000384877 84 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 MIR34B-201ENST00000385076 84 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 RNY4P36-201ENST00000391116 96 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 OR6C66P-201ENST00000414917 930 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC018630.2-202ENST00000422992 927 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AL159987.2-201ENST00000432754 307 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC239809.1-201ENST00000450470 217 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 snoU13.7-201ENST00000459220 104 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 RPL30P11-201ENST00000495304 339 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC021146.3-201ENST00000511911 260 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC107918.3-201ENST00000533272 382 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC007458.1-201ENST00000542812 373 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 CYP4A43P-201ENST00000568156 121 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 MIR4424-201ENST00000585257 86 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 uc_338.11-201ENST00000619132 160 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AP001273.1-201ENST00000624493 3152 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 MTND4P14-201ENST00000435799 1354 ntBASIC5.03□□□□□ -1.6
USHBP1Q8N6Y0 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.61
USHBP1Q8N6Y0 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.61
USHBP1Q8N6Y0 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 Y_RNA.197-201ENST00000364004 102 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 U3.12-201ENST00000364498 214 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 SNORD82-201ENST00000365530 70 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-178P-201ENST00000384631 104 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 RNU2-39P-201ENST00000410604 198 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 RNU4-14P-201ENST00000410858 122 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 RN7SKP247-201ENST00000411094 308 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 OR2AS1P-201ENST00000427827 319 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 SNORA71B-202ENST00000439232 272 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 IPO7P1-201ENST00000442031 636 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 SNORD121B-201ENST00000458838 81 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 RNU7-152P-201ENST00000458982 64 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 RN7SL271P-201ENST00000487601 295 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AC083904.1-201ENST00000487828 231 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AC068305.1-201ENST00000497406 726 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms