Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC234778.2-201ENST00000566241 354 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 MIR744-201ENST00000578242 98 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 MIR4325-201ENST00000583049 90 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC013468.1-201ENST00000608680 598 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 DUXAP10-204ENST00000612052 616 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 AC104763.3-201ENST00000613765 618 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 MIR6758-201ENST00000620653 63 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 TEX41-300ENST00000631048 69 ntTSL 5 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 MTND2P41-201ENST00000637599 773 ntBASIC0.77□□□□□ -2.29
LINC00643Q86TS7 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC0.77□□□□□ -2.29
LINC00643Q86TS7 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC005539.1-201ENST00000443768 1479 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 TEX21P-201ENST00000447107 1476 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 RNU6-1083P-201ENST00000384022 107 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 RNVU1-14-201ENST00000384770 164 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 RNU6-821P-201ENST00000390995 107 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 RNA5SP184-201ENST00000411071 108 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 PIGPP2-201ENST00000411569 458 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 OR4K6P-201ENST00000416478 897 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AL358453.1-201ENST00000422522 250 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AL513175.1-201ENST00000431492 780 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 DYNLT3P2-201ENST00000442517 295 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 MTCO1P48-201ENST00000448024 1096 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 RPS27P23-201ENST00000487608 251 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC106872.3-201ENST00000495104 446 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AP003497.1-201ENST00000528472 562 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC113192.3-201ENST00000529152 742 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AL031274.2-201ENST00000599419 203 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC008121.1-201ENST00000603244 268 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC022202.1-201ENST00000613515 211 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC084768.2-201ENST00000622736 221 ntBASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
LINC00643Q86TS7 AC062016.1-201ENST00000355719 319 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 Y_RNA.62-201ENST00000362840 99 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AL035405.1-201ENST00000400795 710 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AL356320.1-201ENST00000429616 163 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 MTND5P25-201ENST00000430499 799 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 YWHAZP8-201ENST00000436935 731 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AL691517.1-201ENST00000440833 1235 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 RPL39P29-201ENST00000447779 157 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 MTND2P19-201ENST00000449129 1012 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 RPL31P60-201ENST00000478450 367 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 RPL38P4-201ENST00000502376 214 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AF213884.2-201ENST00000510417 903 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 RNU4-29P-201ENST00000515943 174 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 RNU6-798P-201ENST00000516912 103 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 SNORA31.24-201ENST00000517232 57 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 RPL21P5-201ENST00000554662 472 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 MTCYBP27-201ENST00000555160 670 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AC009063.1-201ENST00000563342 702 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AC069294.1-201ENST00000608397 350 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 AL137790.1-201ENST00000634283 177 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 ZNF72P-201ENST00000425869 1908 ntBASIC0.75□□□□□ -2.29
LINC00643Q86TS7 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.75□□□□□ -2.29
LINC00643Q86TS7 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 MTND5P29-201ENST00000458676 1807 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 RNA5SP289-201ENST00000362332 137 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 Y_RNA.67-201ENST00000362870 100 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 DSTNP4-201ENST00000399472 474 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 TEX41-202ENST00000414256 604 ntTSL 5 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC0.74□□□□□ -2.29
LINC00643Q86TS7 USP9YP35-201ENST00000435696 412 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 BNIP3P2-201ENST00000441221 577 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 AL589880.1-201ENST00000448271 287 ntBASIC0.74□□□□□ -2.29
LINC00643Q86TS7 AC017007.3-201ENST00000479865 435 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms