Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SNORD48-201ENST00000364953 64 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
FOXA3P55318 VN1R51P-201ENST00000411675 945 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 SNORD56-201ENST00000413522 71 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AL357078.2-201ENST00000416486 427 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC093106.2-201ENST00000428212 385 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AL049734.2-201ENST00000441066 616 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 DDX3P2-201ENST00000446138 111 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 RAD1P2-201ENST00000446414 663 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 HMGN1P5-201ENST00000448591 263 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 RFC5P1-201ENST00000454419 874 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 MTCO3P2-201ENST00000457365 171 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC020699.1-201ENST00000505161 445 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AC113420.1-201ENST00000507903 571 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA3P55318 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA3P55318 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC1.4□□□□□ -2.19
FOXA3P55318 MIR3199-1-201ENST00000582434 88 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
FOXA3P55318 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC008498.1-201ENST00000613012 531 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AC006213.4-201ENST00000616184 634 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AL162233.1-201ENST00000620014 944 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.4□□□□□ -2.19
FOXA3P55318 AC073592.7-201ENST00000623659 507 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 AC025048.6-202ENST00000627667 438 ntBASIC1.4□□□□□ -2.19
FOXA3P55318 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
FOXA3P55318 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
FOXA3P55318 AC007785.2-201ENST00000598627 1916 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 RNA5SP125-201ENST00000364843 120 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 RNA5SP363-201ENST00000365072 115 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 RN7SKP158-201ENST00000410453 326 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AC023141.4-201ENST00000412031 328 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC1.39□□□□□ -2.19
FOXA3P55318 AL109913.1-201ENST00000421173 514 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.39□□□□□ -2.19
FOXA3P55318 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.39□□□□□ -2.19
FOXA3P55318 RPL26P6-201ENST00000440913 438 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 MTCO3P11-201ENST00000455103 774 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AC034222.1-201ENST00000494052 532 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AC138853.1-201ENST00000503549 823 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC1.39□□□□□ -2.19
FOXA3P55318 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.39□□□□□ -2.19
FOXA3P55318 AC103783.1-201ENST00000520506 373 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.39□□□□□ -2.19
FOXA3P55318 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC1.39□□□□□ -2.19
FOXA3P55318 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
FOXA3P55318 SETP7-201ENST00000552169 453 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC1.39□□□□□ -2.19
FOXA3P55318 AL133241.1-201ENST00000556832 487 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC1.39□□□□□ -2.19
FOXA3P55318 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.39□□□□□ -2.19
FOXA3P55318 SNORD39.3-201ENST00000584451 71 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 HMGN2P15-201ENST00000585707 270 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.39□□□□□ -2.19
FOXA3P55318 AC022387.2-201ENST00000604050 448 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 YWHAEP7-203ENST00000622054 312 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 AC244517.12-201ENST00000623581 663 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
FOXA3P55318 OR4G11P-202ENST00000642116 1414 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 GDI2P1-201ENST00000429312 1336 ntBASIC1.39□□□□□ -2.19
FOXA3P55318 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC1.38□□□□□ -2.19
FOXA3P55318 MIR135A2-201ENST00000384854 100 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 RN7SKP32-201ENST00000410167 303 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AL445685.2-201ENST00000422551 342 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC003685.2-201ENST00000422795 395 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC1.38□□□□□ -2.19
FOXA3P55318 AL445646.1-201ENST00000431784 216 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC093155.1-201ENST00000440164 826 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.38□□□□□ -2.19
FOXA3P55318 TPT1P14-201ENST00000448018 505 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.38□□□□□ -2.19
FOXA3P55318 RPL21P134-201ENST00000453468 483 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 snoU109.1-201ENST00000459339 135 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC080013.2-201ENST00000460866 323 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
FOXA3P55318 AC107032.1-201ENST00000485945 480 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC1.38□□□□□ -2.19
FOXA3P55318 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC1.38□□□□□ -2.19
FOXA3P55318 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC1.38□□□□□ -2.19
FOXA3P55318 AC104090.1-201ENST00000506341 1171 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC114781.4-201ENST00000513707 639 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.38□□□□□ -2.19
FOXA3P55318 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC1.38□□□□□ -2.19
FOXA3P55318 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC1.38□□□□□ -2.19
FOXA3P55318 AP003122.3-201ENST00000526316 255 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AP002748.2-201ENST00000528671 348 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC118273.2-201ENST00000532092 465 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 ATP5F1P7-201ENST00000567330 760 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 MIR4299-201ENST00000577899 72 ntBASIC1.38□□□□□ -2.19
FOXA3P55318 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.38□□□□□ -2.19
FOXA3P55318 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms