Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX2P35548 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.15□□□□□ -1.75
MSX2P35548 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX2P35548 RPL30P15-201ENST00000457129 321 ntBASIC4.15□□□□□ -1.75
MSX2P35548 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.15□□□□□ -1.75
MSX2P35548 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.15□□□□□ -1.75
MSX2P35548 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.15□□□□□ -1.75
MSX2P35548 RN7SKP276-201ENST00000516242 268 ntBASIC4.15□□□□□ -1.75
MSX2P35548 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.15□□□□□ -1.75
MSX2P35548 RN7SKP295-201ENST00000517264 153 ntBASIC4.15□□□□□ -1.75
MSX2P35548 AP000676.2-201ENST00000529711 301 ntBASIC4.15□□□□□ -1.75
MSX2P35548 AC135001.1-201ENST00000544546 283 ntBASIC4.15□□□□□ -1.75
MSX2P35548 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.15□□□□□ -1.75
MSX2P35548 AL110118.1-201ENST00000553543 400 ntBASIC4.15□□□□□ -1.75
MSX2P35548 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX2P35548 AC138761.3-201ENST00000579993 334 ntBASIC4.15□□□□□ -1.75
MSX2P35548 MIR4680-201ENST00000580906 66 ntBASIC4.15□□□□□ -1.75
MSX2P35548 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX2P35548 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX2P35548 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.15□□□□□ -1.75
MSX2P35548 AC087588.2-201ENST00000617667 426 ntBASIC4.15□□□□□ -1.75
MSX2P35548 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
MSX2P35548 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
MSX2P35548 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
MSX2P35548 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.15□□□□□ -1.75
MSX2P35548 FAM91A3P-201ENST00000456826 2544 ntBASIC4.15□□□□□ -1.75
MSX2P35548 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.15□□□□□ -1.75
MSX2P35548 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
MSX2P35548 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.14□□□□□ -1.75
MSX2P35548 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.14□□□□□ -1.75
MSX2P35548 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
MSX2P35548 AC103710.2-202ENST00000641454 2853 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RNU6-1115P-201ENST00000362490 106 ntBASIC4.14□□□□□ -1.75
MSX2P35548 SNORD116-11-201ENST00000383882 92 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RNU6-1127P-201ENST00000384580 107 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RNU6-310P-201ENST00000384655 107 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RNU6-1106P-201ENST00000390845 107 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RNA5SP56-201ENST00000410277 118 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RNU6-516P-201ENST00000411381 104 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RPS12P24-201ENST00000412619 387 ntBASIC4.14□□□□□ -1.75
MSX2P35548 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.14□□□□□ -1.75
MSX2P35548 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.14□□□□□ -1.75
MSX2P35548 MTCYBP9-201ENST00000431021 303 ntBASIC4.14□□□□□ -1.75
MSX2P35548 AL049745.1-201ENST00000433953 286 ntBASIC4.14□□□□□ -1.75
MSX2P35548 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.14□□□□□ -1.75
MSX2P35548 RPL23AP89-201ENST00000439324 255 ntBASIC4.14□□□□□ -1.75
MSX2P35548 H2AFZP6-201ENST00000444403 394 ntBASIC4.14□□□□□ -1.75
MSX2P35548 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC4.14□□□□□ -1.75
MSX2P35548 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.14□□□□□ -1.75
MSX2P35548 SNORD97-201ENST00000459187 142 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RPS26P15-201ENST00000488067 348 ntBASIC4.14□□□□□ -1.75
MSX2P35548 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.14□□□□□ -1.75
MSX2P35548 AC108078.2-201ENST00000510750 236 ntBASIC4.14□□□□□ -1.75
MSX2P35548 RNU6-189P-201ENST00000516120 101 ntBASIC4.14□□□□□ -1.75
MSX2P35548 AP003122.3-201ENST00000526316 255 ntBASIC4.14□□□□□ -1.75
MSX2P35548 DEFB108D-201ENST00000527787 222 ntBASIC4.14□□□□□ -1.75
MSX2P35548 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
MSX2P35548 AC021006.3-201ENST00000530771 192 ntBASIC4.14□□□□□ -1.75
MSX2P35548 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.14□□□□□ -1.75
MSX2P35548 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.14□□□□□ -1.75
MSX2P35548 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.14□□□□□ -1.75
MSX2P35548 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.14□□□□□ -1.75
MSX2P35548 AL355812.1-201ENST00000603215 216 ntBASIC4.14□□□□□ -1.75
MSX2P35548 AL161637.1-201ENST00000622380 412 ntBASIC4.14□□□□□ -1.75
MSX2P35548 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
MSX2P35548 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.14□□□□□ -1.75
MSX2P35548 ZNF137P-201ENST00000456718 1920 ntBASIC4.14□□□□□ -1.75
MSX2P35548 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.14□□□□□ -1.75
MSX2P35548 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.14□□□□□ -1.75
MSX2P35548 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
MSX2P35548 ZNF519P1-201ENST00000449011 1626 ntBASIC4.13□□□□□ -1.75
MSX2P35548 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.13□□□□□ -1.75
MSX2P35548 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
MSX2P35548 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.13□□□□□ -1.75
MSX2P35548 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.13□□□□□ -1.75
MSX2P35548 EXOC5P1-201ENST00000510543 1969 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC018555.1-201ENST00000567548 1980 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AL133412.1-201ENST00000380194 2992 ntBASIC4.13□□□□□ -1.75
MSX2P35548 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSX2P35548 AL590240.1-201ENST00000334118 313 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC117470.1-201ENST00000381974 330 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RNU6-432P-201ENST00000384196 109 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RNU6-754P-201ENST00000391166 107 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AL109755.1-201ENST00000401791 649 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RPL30P2-201ENST00000414021 291 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.13□□□□□ -1.75
MSX2P35548 ATG3P1-201ENST00000419507 911 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RPL21P112-201ENST00000434403 463 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RPL35AP22-201ENST00000436855 335 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC005154.2-201ENST00000438110 379 ntBASIC4.13□□□□□ -1.75
MSX2P35548 TXNP1-201ENST00000441872 371 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.13□□□□□ -1.75
MSX2P35548 AL035666.1-201ENST00000446195 348 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RPL21P23-201ENST00000446654 460 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RPS15AP27-201ENST00000449183 343 ntBASIC4.13□□□□□ -1.75
MSX2P35548 MIR2053-201ENST00000459295 91 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RN7SL585P-201ENST00000470538 280 ntBASIC4.13□□□□□ -1.75
MSX2P35548 S100A11P1-201ENST00000477525 312 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms