Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC022483.1-201ENST00000514020 567 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 SNORA31.1-201ENST00000515993 133 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 SNORA31.5-201ENST00000516190 133 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 MRPS36P3-201ENST00000519284 130 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 UBTFL10-201ENST00000528532 562 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC092435.3-201ENST00000565538 3654 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC010653.1-201ENST00000571108 881 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL031281.1-201ENST00000604049 488 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AC090186.1-201ENST00000605991 572 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL158211.4-201ENST00000606988 584 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 MIR6076-201ENST00000617521 113 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL607023.1-201ENST00000620045 248 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AL356596.1-201ENST00000624230 379 ntBASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
VPS54Q9P1Q0 MTCO1P9-201ENST00000505577 1534 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 SNORD113-6-201ENST00000363345 75 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 RNU6-525P-201ENST00000363685 104 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 MIR9-1-201ENST00000385198 89 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 RPS4XP3-201ENST00000398541 413 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 RNA5SP38-201ENST00000410750 119 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 RPS24P7-201ENST00000416921 246 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AL139281.1-201ENST00000422120 335 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 TMEM167AP1-201ENST00000423409 219 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 RPL27AP8-201ENST00000424277 446 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 USP9YP36-201ENST00000424581 829 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 PAXBP1P1-201ENST00000449315 447 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC108938.1-201ENST00000451204 136 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 RPL23AP35-201ENST00000451906 501 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AL359273.1-201ENST00000510918 627 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 GMPSP1-201ENST00000514075 579 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 RNA5SP356-201ENST00000515972 94 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC100870.1-201ENST00000522035 505 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AP003497.1-201ENST00000528472 562 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 MIR4319-201ENST00000577285 85 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC105224.1-201ENST00000587055 421 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC234772.3-201ENST00000602277 528 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC013244.3-201ENST00000605614 388 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 TUSC7.1-201ENST00000610969 165 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC023510.2-201ENST00000622162 746 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC008443.7-201ENST00000622195 246 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 AC011460.1-201ENST00000636268 1834 ntBASIC3.05□□□□□ -1.92
VPS54Q9P1Q0 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 RNU6-462P-201ENST00000362659 105 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 CD24P4-201ENST00000382840 243 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 RSL24D1P4-201ENST00000400938 484 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 ATG3P1-201ENST00000419507 911 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC083875.1-201ENST00000419509 405 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC090774.1-201ENST00000435925 246 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AL590664.1-201ENST00000448065 339 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AL049714.1-201ENST00000466686 347 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 RPL23AP11-201ENST00000475260 469 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AL049873.1-201ENST00000480540 376 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 RPL30P14-201ENST00000482744 348 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 HMGB1P6-201ENST00000569046 646 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AL354943.1-201ENST00000572103 781 ntBASIC3.04□□□□□ -1.92
VPS54Q9P1Q0 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms