Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PTPN9P43378 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
PTPN9P43378 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.67□□□□□ -1.82
PTPN9P43378 FRG1CP-201ENST00000358464 769 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AL359837.1-201ENST00000381357 287 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 RNU6-278P-201ENST00000390945 109 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 ELOCP17-201ENST00000414751 326 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AC017079.2-201ENST00000416102 485 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PTPN9P43378 AC068533.1-201ENST00000418542 415 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
PTPN9P43378 MTCO1P39-201ENST00000426148 480 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 MTCO3P30-201ENST00000426425 670 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AC119618.1-201ENST00000434191 222 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.67□□□□□ -1.82
PTPN9P43378 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC090774.1-201ENST00000435925 246 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AC004866.2-201ENST00000438285 481 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.67□□□□□ -1.82
PTPN9P43378 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC010285.1-201ENST00000470580 392 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 RPS3AP17-201ENST00000472594 777 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AC020893.1-201ENST00000502452 580 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AC107401.1-201ENST00000503426 685 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 HMGB1P29-201ENST00000505659 499 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AC108078.1-201ENST00000508073 725 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC100870.1-201ENST00000522035 505 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PTPN9P43378 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC008277.2-201ENST00000605196 797 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AL590282.1-201ENST00000610379 1136 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 MIR7851-201ENST00000610611 160 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC013476.2-201ENST00000614456 459 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 AL450472.3-201ENST00000615578 367 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.67□□□□□ -1.82
PTPN9P43378 AC243312.2-201ENST00000623340 601 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PTPN9P43378 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.67□□□□□ -1.82
PTPN9P43378 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
PTPN9P43378 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.67□□□□□ -1.82
PTPN9P43378 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN9P43378 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN9P43378 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN9P43378 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN9P43378 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN9P43378 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN9P43378 RNY4P16-201ENST00000364768 94 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 RN7SKP226-201ENST00000364912 300 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
PTPN9P43378 RNU6-1103P-201ENST00000384150 107 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AL136372.1-201ENST00000403060 228 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AL136116.1-201ENST00000403591 381 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 RPS3AP24-201ENST00000407896 734 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 Y_RNA.619-201ENST00000410951 90 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.66□□□□□ -1.82
PTPN9P43378 MTCO1P21-201ENST00000416634 589 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 TOMM22P1-201ENST00000418578 312 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.66□□□□□ -1.82
PTPN9P43378 AC104651.1-201ENST00000427559 735 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 ISCA1P6-201ENST00000427740 390 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC133104.1-201ENST00000429100 218 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 C8orf59P1-201ENST00000429930 303 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC005094.1-201ENST00000440420 368 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN9P43378 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN9P43378 AC016696.1-201ENST00000446949 318 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AL162389.1-201ENST00000449233 177 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC079448.1-201ENST00000449377 373 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 RBMY2UP-201ENST00000453474 324 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 U3.44-201ENST00000458938 192 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 RPL9P33-201ENST00000484311 566 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN9P43378 FCF1P3-201ENST00000496394 590 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
PTPN9P43378 AC026403.1-201ENST00000518938 295 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN9P43378 AC011979.2-201ENST00000527568 352 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN9P43378 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN9P43378 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.66□□□□□ -1.82
PTPN9P43378 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.66□□□□□ -1.82
PTPN9P43378 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN9P43378 AC034105.4-201ENST00000568304 277 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN9P43378 AL022099.1-201ENST00000604551 712 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.66□□□□□ -1.82
PTPN9P43378 AL592295.2-201ENST00000612578 206 ntBASIC3.66□□□□□ -1.82
PTPN9P43378 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN9P43378 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN9P43378 U4.6-201ENST00000621618 127 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms