Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL133153.1-201ENST00000557756 303 ntBASIC3.17□□□□□ -1.9
VIMP08670 RPL23AP84-201ENST00000571193 464 ntBASIC3.17□□□□□ -1.9
VIMP08670 AF038458.1-201ENST00000588406 262 ntBASIC3.17□□□□□ -1.9
VIMP08670 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.17□□□□□ -1.9
VIMP08670 Z99289.3-201ENST00000605586 594 ntBASIC3.17□□□□□ -1.9
VIMP08670 AC007038.2-201ENST00000608095 740 ntBASIC3.17□□□□□ -1.9
VIMP08670 MIR6748-201ENST00000610433 71 ntBASIC3.17□□□□□ -1.9
VIMP08670 AC107871.2-201ENST00000612894 502 ntBASIC3.17□□□□□ -1.9
VIMP08670 AC013476.2-201ENST00000614456 459 ntBASIC3.17□□□□□ -1.9
VIMP08670 AC010133.1-201ENST00000615809 842 ntBASIC3.17□□□□□ -1.9
VIMP08670 AL138880.2-201ENST00000616214 239 ntBASIC3.17□□□□□ -1.9
VIMP08670 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.17□□□□□ -1.9
VIMP08670 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.17□□□□□ -1.9
VIMP08670 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VIMP08670 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.17□□□□□ -1.9
VIMP08670 FAM35BP-202ENST00000497389 3337 ntBASIC3.16□□□□□ -1.9
VIMP08670 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
VIMP08670 TPTE2P4-201ENST00000258589 1605 ntBASIC3.16□□□□□ -1.9
VIMP08670 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.16□□□□□ -1.9
VIMP08670 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VIMP08670 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VIMP08670 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
VIMP08670 Y_RNA.97-201ENST00000363094 102 ntBASIC3.16□□□□□ -1.9
VIMP08670 SNORA14A-201ENST00000364773 135 ntBASIC3.16□□□□□ -1.9
VIMP08670 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
VIMP08670 AC110754.1-201ENST00000399740 601 ntBASIC3.16□□□□□ -1.9
VIMP08670 AL109755.1-201ENST00000401791 649 ntBASIC3.16□□□□□ -1.9
VIMP08670 AL357075.1-201ENST00000404107 726 ntBASIC3.16□□□□□ -1.9
VIMP08670 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.16□□□□□ -1.9
VIMP08670 HSFY4P-201ENST00000415994 1181 ntBASIC3.16□□□□□ -1.9
VIMP08670 VPS26BP1-201ENST00000417155 755 ntBASIC3.16□□□□□ -1.9
VIMP08670 AL035423.1-201ENST00000420331 213 ntBASIC3.16□□□□□ -1.9
VIMP08670 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.16□□□□□ -1.9
VIMP08670 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.16□□□□□ -1.9
VIMP08670 ATP5C1P1-201ENST00000441945 895 ntBASIC3.16□□□□□ -1.9
VIMP08670 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.16□□□□□ -1.9
VIMP08670 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.16□□□□□ -1.9
VIMP08670 RPS20P20-201ENST00000460498 340 ntBASIC3.16□□□□□ -1.9
VIMP08670 AC068587.1-201ENST00000483613 781 ntBASIC3.16□□□□□ -1.9
VIMP08670 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.16□□□□□ -1.9
VIMP08670 TRMT10BP1-201ENST00000519377 943 ntBASIC3.16□□□□□ -1.9
VIMP08670 OR5G4P-201ENST00000525251 760 ntBASIC3.16□□□□□ -1.9
VIMP08670 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VIMP08670 AP000907.2-201ENST00000530827 353 ntBASIC3.16□□□□□ -1.9
VIMP08670 AP000857.1-201ENST00000532151 543 ntBASIC3.16□□□□□ -1.9
VIMP08670 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.16□□□□□ -1.9
VIMP08670 RN7SL703P-201ENST00000578485 302 ntBASIC3.16□□□□□ -1.9
VIMP08670 MIR3609-201ENST00000582661 80 ntBASIC3.16□□□□□ -1.9
VIMP08670 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.16□□□□□ -1.9
VIMP08670 VN1R85P-201ENST00000601587 426 ntBASIC3.16□□□□□ -1.9
VIMP08670 PRELID3BP8-201ENST00000604148 295 ntBASIC3.16□□□□□ -1.9
VIMP08670 AL162713.1-201ENST00000604480 262 ntBASIC3.16□□□□□ -1.9
VIMP08670 AC004908.2-201ENST00000609090 574 ntBASIC3.16□□□□□ -1.9
VIMP08670 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.16□□□□□ -1.9
VIMP08670 AL356266.1-201ENST00000623311 483 ntBASIC3.16□□□□□ -1.9
VIMP08670 OR5H6-203ENST00000642105 978 ntBASIC3.16□□□□□ -1.9
VIMP08670 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VIMP08670 AC009487.2-201ENST00000420969 6821 ntBASIC3.16□□□□□ -1.9
VIMP08670 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VIMP08670 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
VIMP08670 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
VIMP08670 Z83843.1-201ENST00000604070 3685 ntBASIC3.15□□□□□ -1.91
VIMP08670 AC126755.2-208ENST00000327792 462 ntBASIC3.15□□□□□ -1.91
VIMP08670 AC138969.1-213ENST00000331436 462 ntBASIC3.15□□□□□ -1.91
VIMP08670 RNU6-500P-201ENST00000362349 107 ntBASIC3.15□□□□□ -1.91
VIMP08670 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
VIMP08670 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.15□□□□□ -1.91
VIMP08670 RN7SKP159-201ENST00000410657 292 ntBASIC3.15□□□□□ -1.91
VIMP08670 RN7SKP140-201ENST00000411196 284 ntBASIC3.15□□□□□ -1.91
VIMP08670 RNA5SP492-201ENST00000411330 114 ntBASIC3.15□□□□□ -1.91
VIMP08670 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.15□□□□□ -1.91
VIMP08670 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.15□□□□□ -1.91
VIMP08670 AC091390.3-201ENST00000426478 338 ntBASIC3.15□□□□□ -1.91
VIMP08670 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.15□□□□□ -1.91
VIMP08670 AC004975.1-201ENST00000428733 208 ntBASIC3.15□□□□□ -1.91
VIMP08670 AL512649.1-201ENST00000428997 581 ntBASIC3.15□□□□□ -1.91
VIMP08670 CYCSP4-201ENST00000429682 331 ntBASIC3.15□□□□□ -1.91
VIMP08670 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.15□□□□□ -1.91
VIMP08670 MTCO3P45-201ENST00000443036 613 ntBASIC3.15□□□□□ -1.91
VIMP08670 SNRPGP6-201ENST00000451124 220 ntBASIC3.15□□□□□ -1.91
VIMP08670 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.15□□□□□ -1.91
VIMP08670 MTCO1P42-201ENST00000457379 726 ntBASIC3.15□□□□□ -1.91
VIMP08670 AL031183.1-201ENST00000457667 207 ntBASIC3.15□□□□□ -1.91
VIMP08670 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.15□□□□□ -1.91
VIMP08670 AC034236.1-201ENST00000469891 373 ntBASIC3.15□□□□□ -1.91
VIMP08670 AL135752.1-201ENST00000479477 471 ntBASIC3.15□□□□□ -1.91
VIMP08670 AC025518.1-201ENST00000479856 347 ntBASIC3.15□□□□□ -1.91
VIMP08670 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
VIMP08670 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.15□□□□□ -1.91
VIMP08670 NRON-201ENST00000517270 370 ntBASIC3.15□□□□□ -1.91
VIMP08670 IGKV2-26-201ENST00000518305 343 ntBASIC3.15□□□□□ -1.91
VIMP08670 AC103843.2-201ENST00000530523 682 ntBASIC3.15□□□□□ -1.91
VIMP08670 AP000867.2-201ENST00000532468 320 ntBASIC3.15□□□□□ -1.91
VIMP08670 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.15□□□□□ -1.91
VIMP08670 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.15□□□□□ -1.91
VIMP08670 AC007954.1-201ENST00000554198 494 ntBASIC3.15□□□□□ -1.91
VIMP08670 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.15□□□□□ -1.91
VIMP08670 AC008015.1-201ENST00000555505 465 ntBASIC3.15□□□□□ -1.91
VIMP08670 ACTR3BP3-201ENST00000565577 979 ntBASIC3.15□□□□□ -1.91
VIMP08670 AC012435.1-202ENST00000568772 240 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms