Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Cap2-205ENSMUST00000225824 1634 ntBASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Smco4Q9JIS3 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Gm27528-202ENSMUST00000222916 2012 ntBASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 AC160393.1-201ENSMUST00000218378 1279 ntBASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Smco4Q9JIS3 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Smco4Q9JIS3 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Smco4Q9JIS3 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
Smco4Q9JIS3 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Smco4Q9JIS3 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Smco4Q9JIS3 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Smco4Q9JIS3 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Smco4Q9JIS3 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Gm5522-201ENSMUST00000189483 1242 ntBASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Gm42901-201ENSMUST00000197735 3171 ntBASIC13.14□□□□□ -0.31
Smco4Q9JIS3 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Smco4Q9JIS3 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 105.9 ms