Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim54Q9ERP3 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim54Q9ERP3 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Trim54Q9ERP3 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim54Q9ERP3 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Mir5131-201ENSMUST00000175426 93 ntBASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Gm7506-201ENSMUST00000207758 815 ntBASIC17.58■□□□□ 0.4
Trim54Q9ERP3 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim54Q9ERP3 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Gm18206-201ENSMUST00000207027 926 ntBASIC17.57■□□□□ 0.4
Trim54Q9ERP3 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 AC138767.1-201ENSMUST00000222661 415 ntBASIC17.57■□□□□ 0.4
Trim54Q9ERP3 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim54Q9ERP3 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Gm27525-201ENSMUST00000184465 107 ntBASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim54Q9ERP3 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trim54Q9ERP3 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms