Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Gm18206-201ENSMUST00000207027 926 ntBASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cpsf1Q9EPU4 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Gm6089-201ENSMUST00000197666 938 ntBASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Gm18622-201ENSMUST00000219361 595 ntBASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cpsf1Q9EPU4 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC22.34■■□□□ 1.17
Cpsf1Q9EPU4 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC22.33■■□□□ 1.17
Cpsf1Q9EPU4 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
Cpsf1Q9EPU4 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Cpsf1Q9EPU4 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Cpsf1Q9EPU4 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Gm27646-201ENSMUST00000183989 110 ntBASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC22.32■■□□□ 1.16
Cpsf1Q9EPU4 Gm4609-201ENSMUST00000106443 1002 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm5138-201ENSMUST00000113842 1002 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm15191-201ENSMUST00000117933 1000 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm12182-201ENSMUST00000118655 1008 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm13882-201ENSMUST00000120886 1002 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm10284-201ENSMUST00000145057 1005 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm10481-201ENSMUST00000179228 1002 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm2574-201ENSMUST00000181051 1002 ntBASIC22.31■■□□□ 1.16
Cpsf1Q9EPU4 Gm3200-201ENSMUST00000181493 1002 ntBASIC22.31■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms