Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Gm28033-201ENSMUST00000184224 96 ntBASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Gm18669-201ENSMUST00000216049 778 ntBASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdc40Q9DC48 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Wnt10b-204ENSMUST00000226655 1807 ntBASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Mir3081-201ENSMUST00000175305 84 ntBASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdc40Q9DC48 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Gm44443-201ENSMUST00000204396 5633 ntBASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Gm13186-201ENSMUST00000118031 316 ntBASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Cdc40Q9DC48 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Gm45328-201ENSMUST00000210942 917 ntBASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms