Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Gm6433-201ENSMUST00000118634 875 ntBASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Gm27389-201ENSMUST00000183622 195 ntBASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Mir6982-201ENSMUST00000184354 68 ntBASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Gm36967-201ENSMUST00000193814 266 ntBASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Trim11Q99PQ2 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trim11Q99PQ2 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.54■□□□□ 0.56
Trim11Q99PQ2 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Gm21559-201ENSMUST00000220638 855 ntBASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Gm8587-201ENSMUST00000076538 843 ntBASIC18.53■□□□□ 0.56
Trim11Q99PQ2 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms