Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC17.15■□□□□ 0.34
Clp1Q99LI9 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Gm5648-201ENSMUST00000122244 1587 ntBASIC17.15■□□□□ 0.34
Clp1Q99LI9 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clp1Q99LI9 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clp1Q99LI9 H2af-ps-201ENSMUST00000119066 295 ntBASIC17.14■□□□□ 0.33
Clp1Q99LI9 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clp1Q99LI9 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.13■□□□□ 0.33
Clp1Q99LI9 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Auts2-212ENSMUST00000178555 309 ntBASIC17.13■□□□□ 0.33
Clp1Q99LI9 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 AC174742.1-201ENSMUST00000218272 304 ntBASIC17.13■□□□□ 0.33
Clp1Q99LI9 Bloc1s5-203ENSMUST00000224902 612 ntBASIC17.13■□□□□ 0.33
Clp1Q99LI9 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clp1Q99LI9 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Gm4913-201ENSMUST00000117075 1290 ntBASIC17.12■□□□□ 0.33
Clp1Q99LI9 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Chchd1-203ENSMUST00000224633 557 ntBASIC17.12■□□□□ 0.33
Clp1Q99LI9 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.12■□□□□ 0.33
Clp1Q99LI9 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clp1Q99LI9 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Gm7063-201ENSMUST00000186840 981 ntBASIC17.11■□□□□ 0.33
Clp1Q99LI9 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clp1Q99LI9 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.1■□□□□ 0.33
Clp1Q99LI9 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms