Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ushbp1Q8R370 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Gm37722-201ENSMUST00000193757 208 ntBASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Gm29707-201ENSMUST00000196325 491 ntBASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ushbp1Q8R370 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ushbp1Q8R370 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ushbp1Q8R370 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms