Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Gm7729-201ENSMUST00000050143 801 ntBASIC19.69■□□□□ 0.74
Brf1Q8CFK2 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Brf1Q8CFK2 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.68■□□□□ 0.74
Brf1Q8CFK2 AC125350.1-201ENSMUST00000225115 903 ntBASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Brf1Q8CFK2 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Gm44430-201ENSMUST00000203376 995 ntBASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Gm45328-201ENSMUST00000210942 917 ntBASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Brf1Q8CFK2 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Gm9889-202ENSMUST00000206983 1577 ntBASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Brf1Q8CFK2 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Gm15794-201ENSMUST00000120182 631 ntBASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Brf1Q8CFK2 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Brf1Q8CFK2 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Brf1Q8CFK2 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Brf1Q8CFK2 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Brf1Q8CFK2 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Brf1Q8CFK2 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Gm33142-201ENSMUST00000193913 867 ntBASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Brf1Q8CFK2 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms