Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Actl10-202ENSMUST00000226583 1501 ntBASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Nup88Q8CEC0 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Gm3272-201ENSMUST00000181181 1229 ntBASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Gm17971-201ENSMUST00000190239 806 ntBASIC19.21■□□□□ 0.67
Nup88Q8CEC0 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Gm10566-201ENSMUST00000086739 996 ntBASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Nup88Q8CEC0 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Gm18958-201ENSMUST00000174258 762 ntBASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Nup88Q8CEC0 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Nup88Q8CEC0 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Gm11950-201ENSMUST00000121615 838 ntBASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Gm27000-201ENSMUST00000182943 842 ntBASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Gm28033-201ENSMUST00000184224 96 ntBASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Gm17807-201ENSMUST00000186869 298 ntBASIC19.18■□□□□ 0.66
Nup88Q8CEC0 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms