Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Gm27867-201ENSMUST00000184778 125 ntBASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Gm44454-201ENSMUST00000198541 138 ntBASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 AC108846.1-201ENSMUST00000214531 513 ntBASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim47Q8C0E3 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Trim47Q8C0E3 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Trim47Q8C0E3 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Trim47Q8C0E3 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Trim47Q8C0E3 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Gm7935-201ENSMUST00000100555 1278 ntBASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim47Q8C0E3 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC18■□□□□ 0.47
Trim47Q8C0E3 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Gm7153-201ENSMUST00000117092 455 ntBASIC18■□□□□ 0.47
Trim47Q8C0E3 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Gm9954-202ENSMUST00000198686 4725 ntBASIC18■□□□□ 0.47
Trim47Q8C0E3 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trim47Q8C0E3 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim47Q8C0E3 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim47Q8C0E3 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms