Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Gm6550-201ENSMUST00000187574 993 ntBASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Usp40Q8BWR4 Gm5898-201ENSMUST00000121016 2071 ntBASIC22.27■■□□□ 1.16
Usp40Q8BWR4 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 AV026068-213ENSMUST00000223675 1171 ntBASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Usp40Q8BWR4 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
Usp40Q8BWR4 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 AC132104.2-201ENSMUST00000215011 266 ntBASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Gm15635-204ENSMUST00000208024 2539 ntBASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Usp40Q8BWR4 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Gm37500-201ENSMUST00000192059 1443 ntBASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 AC159106.1-201ENSMUST00000224421 690 ntBASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Psmb5-202ENSMUST00000227257 622 ntBASIC22.25■■□□□ 1.15
Usp40Q8BWR4 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Usp40Q8BWR4 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Usp40Q8BWR4 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Gm11779-201ENSMUST00000118541 368 ntBASIC22.23■■□□□ 1.15
Usp40Q8BWR4 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Gm43332-201ENSMUST00000202511 1044 ntBASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Gm18622-201ENSMUST00000219361 595 ntBASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Usp40Q8BWR4 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms