Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.06■□□□□ 0.16
Ubp1Q811S7 Gm33142-201ENSMUST00000193913 867 ntBASIC16.06■□□□□ 0.16
Ubp1Q811S7 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ubp1Q811S7 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.05■□□□□ 0.16
Ubp1Q811S7 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Ubp1Q811S7 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Ubp1Q811S7 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Ubp1Q811S7 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Gm7284-201ENSMUST00000131667 944 ntBASIC16.03■□□□□ 0.16
Ubp1Q811S7 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
Ubp1Q811S7 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 AC154471.1-201ENSMUST00000224418 436 ntBASIC16.03■□□□□ 0.16
Ubp1Q811S7 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Ubp1Q811S7 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Gm45328-201ENSMUST00000210942 917 ntBASIC16.02■□□□□ 0.16
Ubp1Q811S7 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ubp1Q811S7 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Ubp1Q811S7 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ubp1Q811S7 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
Ubp1Q811S7 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ubp1Q811S7 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ubp1Q811S7 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Ubp1Q811S7 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ubp1Q811S7 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ubp1Q811S7 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ubp1Q811S7 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ubp1Q811S7 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms