Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ddx58Q6Q899 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Gm13216-201ENSMUST00000117145 591 ntBASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Gm4459-201ENSMUST00000118750 468 ntBASIC20.09■□□□□ 0.81
Ddx58Q6Q899 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx58Q6Q899 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx58Q6Q899 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx58Q6Q899 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx58Q6Q899 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx58Q6Q899 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx58Q6Q899 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx58Q6Q899 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx58Q6Q899 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx58Q6Q899 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx58Q6Q899 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx58Q6Q899 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
Ddx58Q6Q899 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx58Q6Q899 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Gm4535-201ENSMUST00000182274 558 ntBASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Gm10355-201ENSMUST00000097146 517 ntBASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx58Q6Q899 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx58Q6Q899 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms