Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Gm7638-201ENSMUST00000121348 967 ntBASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Gm24841-201ENSMUST00000158676 357 ntBASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Gm7791-201ENSMUST00000219066 539 ntBASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Sh3rf1Q69ZI1 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Sh3rf1Q69ZI1 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sh3rf1Q69ZI1 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sh3rf1Q69ZI1 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Sh3rf1Q69ZI1 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sh3rf1Q69ZI1 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sh3rf1Q69ZI1 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sh3rf1Q69ZI1 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sh3rf1Q69ZI1 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Sh3rf1Q69ZI1 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Gm16061-201ENSMUST00000122167 857 ntBASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Sh3rf1Q69ZI1 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Sh3rf1Q69ZI1 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms