Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Trim27Q62158 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 AA414768-201ENSMUST00000121924 1257 ntBASIC20.03■□□□□ 0.8
Trim27Q62158 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
Trim27Q62158 CT009713.7-201ENSMUST00000224689 571 ntBASIC20.03■□□□□ 0.8
Trim27Q62158 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Trim27Q62158 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim27Q62158 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim27Q62158 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim27Q62158 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Trim27Q62158 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim27Q62158 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
Trim27Q62158 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim27Q62158 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Trim27Q62158 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim27Q62158 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
Trim27Q62158 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim27Q62158 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim27Q62158 Gm19430-201ENSMUST00000193847 2137 ntBASIC20.02■□□□□ 0.79
Trim27Q62158 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim27Q62158 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim27Q62158 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim27Q62158 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Trim27Q62158 Gm6858-201ENSMUST00000208582 1468 ntBASIC20.01■□□□□ 0.79
Trim27Q62158 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim27Q62158 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC20.01■□□□□ 0.79
Trim27Q62158 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim27Q62158 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Trim27Q62158 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trim27Q62158 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim27Q62158 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim27Q62158 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim27Q62158 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Trim27Q62158 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC20■□□□□ 0.79
Trim27Q62158 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC20■□□□□ 0.79
Trim27Q62158 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Trim27Q62158 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC20■□□□□ 0.79
Trim27Q62158 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
Trim27Q62158 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim27Q62158 AC132265.1-201ENSMUST00000219233 1665 ntBASIC20■□□□□ 0.79
Trim27Q62158 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC20■□□□□ 0.79
Trim27Q62158 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC20■□□□□ 0.79
Trim27Q62158 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC19.99■□□□□ 0.79
Trim27Q62158 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC19.99■□□□□ 0.79
Trim27Q62158 Gm15794-201ENSMUST00000120182 631 ntBASIC19.99■□□□□ 0.79
Trim27Q62158 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.99■□□□□ 0.79
Trim27Q62158 Gm25016-201ENSMUST00000158399 131 ntBASIC19.99■□□□□ 0.79
Trim27Q62158 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
Trim27Q62158 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim27Q62158 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
Trim27Q62158 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim27Q62158 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC19.98■□□□□ 0.79
Trim27Q62158 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim27Q62158 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim27Q62158 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim27Q62158 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Trim27Q62158 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim27Q62158 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC19.97■□□□□ 0.79
Trim27Q62158 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim27Q62158 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim27Q62158 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Trim27Q62158 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim27Q62158 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms