Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col11a1Q61245 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col11a1Q61245 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col11a1Q61245 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col11a1Q61245 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col11a1Q61245 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col11a1Q61245 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col11a1Q61245 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Col11a1Q61245 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Col11a1Q61245 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC18.14■□□□□ 0.5
Col11a1Q61245 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC18.14■□□□□ 0.5
Col11a1Q61245 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC18.14■□□□□ 0.5
Col11a1Q61245 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Col11a1Q61245 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.14■□□□□ 0.49
Col11a1Q61245 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Col11a1Q61245 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 Gm15358-201ENSMUST00000119249 520 ntBASIC18.14■□□□□ 0.49
Col11a1Q61245 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col11a1Q61245 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Col11a1Q61245 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.13■□□□□ 0.49
Col11a1Q61245 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Col11a1Q61245 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC18.13■□□□□ 0.49
Col11a1Q61245 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Gm18246-201ENSMUST00000221023 728 ntBASIC18.13■□□□□ 0.49
Col11a1Q61245 Gm5628-201ENSMUST00000222318 1049 ntBASIC18.13■□□□□ 0.49
Col11a1Q61245 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.13■□□□□ 0.49
Col11a1Q61245 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col11a1Q61245 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Col11a1Q61245 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Col11a1Q61245 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 AC154767.3-201ENSMUST00000225150 1342 ntBASIC18.12■□□□□ 0.49
Col11a1Q61245 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.12■□□□□ 0.49
Col11a1Q61245 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Rprl2-201ENSMUST00000157150 290 ntBASIC18.12■□□□□ 0.49
Col11a1Q61245 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Col11a1Q61245 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
Col11a1Q61245 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC18.12■□□□□ 0.49
Col11a1Q61245 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC18.12■□□□□ 0.49
Col11a1Q61245 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 CT025626.1-201ENSMUST00000223735 1455 ntBASIC18.12■□□□□ 0.49
Col11a1Q61245 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.12■□□□□ 0.49
Col11a1Q61245 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Gm11424-201ENSMUST00000121929 829 ntBASIC18.12■□□□□ 0.49
Col11a1Q61245 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC18.12■□□□□ 0.49
Col11a1Q61245 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC18.12■□□□□ 0.49
Col11a1Q61245 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col11a1Q61245 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Col11a1Q61245 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Col11a1Q61245 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC18.11■□□□□ 0.49
Col11a1Q61245 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC18.11■□□□□ 0.49
Col11a1Q61245 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
Col11a1Q61245 CT025535.1-201ENSMUST00000227172 491 ntBASIC18.11■□□□□ 0.49
Col11a1Q61245 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
Col11a1Q61245 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Col11a1Q61245 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Col11a1Q61245 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col11a1Q61245 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Col11a1Q61245 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Col11a1Q61245 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col11a1Q61245 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms