Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CtcfQ61164 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.95■□□□□ 0.46
CtcfQ61164 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.95■□□□□ 0.46
CtcfQ61164 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CtcfQ61164 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CtcfQ61164 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
CtcfQ61164 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 App-207ENSMUST00000227737 2827 ntBASIC17.94■□□□□ 0.46
CtcfQ61164 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.94■□□□□ 0.46
CtcfQ61164 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.94■□□□□ 0.46
CtcfQ61164 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Gm5417-201ENSMUST00000079706 384 ntBASIC17.94■□□□□ 0.46
CtcfQ61164 Gm10812-201ENSMUST00000099864 546 ntBASIC17.94■□□□□ 0.46
CtcfQ61164 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CtcfQ61164 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CtcfQ61164 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CtcfQ61164 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CtcfQ61164 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.93■□□□□ 0.46
CtcfQ61164 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.93■□□□□ 0.46
CtcfQ61164 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC17.93■□□□□ 0.46
CtcfQ61164 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.93■□□□□ 0.46
CtcfQ61164 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Gm10566-201ENSMUST00000086739 996 ntBASIC17.93■□□□□ 0.46
CtcfQ61164 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
CtcfQ61164 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CtcfQ61164 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.92■□□□□ 0.46
CtcfQ61164 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.92■□□□□ 0.46
CtcfQ61164 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CtcfQ61164 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
CtcfQ61164 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.92■□□□□ 0.46
CtcfQ61164 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CtcfQ61164 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
CtcfQ61164 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.91■□□□□ 0.46
CtcfQ61164 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CtcfQ61164 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.91■□□□□ 0.46
CtcfQ61164 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.91■□□□□ 0.46
CtcfQ61164 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CtcfQ61164 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms