Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
Col17a1Q07563 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC24.98■■□□□ 1.59
Col17a1Q07563 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC24.98■■□□□ 1.59
Col17a1Q07563 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC24.98■■□□□ 1.59
Col17a1Q07563 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC24.98■■□□□ 1.59
Col17a1Q07563 Mir6404-201ENSMUST00000183699 94 ntBASIC24.98■■□□□ 1.59
Col17a1Q07563 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
Col17a1Q07563 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
Col17a1Q07563 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC24.98■■□□□ 1.59
Col17a1Q07563 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Col17a1Q07563 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
Col17a1Q07563 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col17a1Q07563 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC24.97■■□□□ 1.59
Col17a1Q07563 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Col17a1Q07563 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col17a1Q07563 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Col17a1Q07563 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
Col17a1Q07563 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm15358-201ENSMUST00000119249 520 ntBASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm15824-201ENSMUST00000119516 955 ntBASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm17150-201ENSMUST00000165577 381 ntBASIC24.96■■□□□ 1.59
Col17a1Q07563 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
Col17a1Q07563 Slc35b2-202ENSMUST00000223987 1766 ntBASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm8344-201ENSMUST00000119813 856 ntBASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Col17a1Q07563 Gm27838-201ENSMUST00000184829 128 ntBASIC24.96■■□□□ 1.59
Col17a1Q07563 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.59
Col17a1Q07563 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Col17a1Q07563 Gm45203-201ENSMUST00000206384 1831 ntBASIC24.95■■□□□ 1.59
Col17a1Q07563 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.59
Col17a1Q07563 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Col17a1Q07563 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Col17a1Q07563 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Col17a1Q07563 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC24.95■■□□□ 1.58
Col17a1Q07563 Gm24694-201ENSMUST00000180054 110 ntBASIC24.95■■□□□ 1.58
Col17a1Q07563 Gm27663-201ENSMUST00000184839 110 ntBASIC24.95■■□□□ 1.58
Col17a1Q07563 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
Col17a1Q07563 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
Col17a1Q07563 Gm45141-201ENSMUST00000206502 1888 ntBASIC24.95■■□□□ 1.58
Col17a1Q07563 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC24.94■■□□□ 1.58
Col17a1Q07563 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
Col17a1Q07563 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC24.94■■□□□ 1.58
Col17a1Q07563 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
Col17a1Q07563 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col17a1Q07563 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Col17a1Q07563 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm4609-201ENSMUST00000106443 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm5138-201ENSMUST00000113842 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm15191-201ENSMUST00000117933 1000 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm12182-201ENSMUST00000118655 1008 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm13882-201ENSMUST00000120886 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm10284-201ENSMUST00000145057 1005 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm10481-201ENSMUST00000179228 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm2574-201ENSMUST00000181051 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm3200-201ENSMUST00000181493 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm4518-201ENSMUST00000182638 718 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm8330-201ENSMUST00000182754 1008 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm4575-201ENSMUST00000182991 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm8709-201ENSMUST00000183230 1012 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm7775-201ENSMUST00000218871 853 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm10293-201ENSMUST00000076317 1002 ntBASIC24.93■■□□□ 1.58
Col17a1Q07563 Gm6316-201ENSMUST00000082064 1020 ntBASIC24.93■■□□□ 1.58
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms