Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lig3P97386 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lig3P97386 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lig3P97386 Gm29791-202ENSMUST00000207888 369 ntBASIC17.74■□□□□ 0.43
Lig3P97386 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lig3P97386 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Lig3P97386 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Lig3P97386 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Lig3P97386 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Lig3P97386 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC17.73■□□□□ 0.43
Lig3P97386 Gm18206-201ENSMUST00000207027 926 ntBASIC17.73■□□□□ 0.43
Lig3P97386 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Lig3P97386 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Lig3P97386 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Lig3P97386 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.72■□□□□ 0.43
Lig3P97386 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Lig3P97386 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
Lig3P97386 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Lig3P97386 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Lig3P97386 Gm18195-201ENSMUST00000207604 706 ntBASIC17.72■□□□□ 0.43
Lig3P97386 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Lig3P97386 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Lig3P97386 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 Actl10-202ENSMUST00000226583 1501 ntBASIC17.72■□□□□ 0.43
Lig3P97386 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.72■□□□□ 0.43
Lig3P97386 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Lig3P97386 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.71■□□□□ 0.43
Lig3P97386 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Lig3P97386 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Lig3P97386 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Lig3P97386 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.71■□□□□ 0.43
Lig3P97386 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.71■□□□□ 0.43
Lig3P97386 Gm27525-201ENSMUST00000184465 107 ntBASIC17.71■□□□□ 0.43
Lig3P97386 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.71■□□□□ 0.43
Lig3P97386 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Lig3P97386 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.71■□□□□ 0.43
Lig3P97386 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.71■□□□□ 0.43
Lig3P97386 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Lig3P97386 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Lig3P97386 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Lig3P97386 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lig3P97386 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Lig3P97386 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Lig3P97386 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Lig3P97386 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Lig3P97386 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Lig3P97386 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.7■□□□□ 0.42
Lig3P97386 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.7■□□□□ 0.42
Lig3P97386 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lig3P97386 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms