Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Msh6P54276 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Msh6P54276 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Msh6P54276 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.58■□□□□ 0.89
Msh6P54276 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh6P54276 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh6P54276 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh6P54276 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Msh6P54276 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh6P54276 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh6P54276 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh6P54276 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Msh6P54276 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Msh6P54276 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC20.58■□□□□ 0.88
Msh6P54276 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Msh6P54276 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Msh6P54276 Gm25911-201ENSMUST00000157621 56 ntBASIC20.58■□□□□ 0.88
Msh6P54276 Gm45683-201ENSMUST00000210825 1247 ntBASIC20.58■□□□□ 0.88
Msh6P54276 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Msh6P54276 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Msh6P54276 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Msh6P54276 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Msh6P54276 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Msh6P54276 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.57■□□□□ 0.88
Msh6P54276 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
Msh6P54276 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC20.57■□□□□ 0.88
Msh6P54276 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Msh6P54276 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC20.57■□□□□ 0.88
Msh6P54276 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC20.57■□□□□ 0.88
Msh6P54276 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msh6P54276 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Msh6P54276 Gm14822-201ENSMUST00000122247 291 ntBASIC20.56■□□□□ 0.88
Msh6P54276 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Msh6P54276 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msh6P54276 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Msh6P54276 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Msh6P54276 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Msh6P54276 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
Msh6P54276 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
Msh6P54276 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Msh6P54276 Gm6184-201ENSMUST00000120403 1261 ntBASIC20.55■□□□□ 0.88
Msh6P54276 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Mir6404-201ENSMUST00000183699 94 ntBASIC20.55■□□□□ 0.88
Msh6P54276 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msh6P54276 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Msh6P54276 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC20.54■□□□□ 0.88
Msh6P54276 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Msh6P54276 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Msh6P54276 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Msh6P54276 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Msh6P54276 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Msh6P54276 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Msh6P54276 AC122901.1-201ENSMUST00000214203 1790 ntBASIC20.53■□□□□ 0.88
Msh6P54276 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 Gm5837-201ENSMUST00000191844 1369 ntBASIC20.53■□□□□ 0.88
Msh6P54276 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC20.53■□□□□ 0.88
Msh6P54276 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC20.53■□□□□ 0.88
Msh6P54276 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 AC090659.1-201ENSMUST00000224334 768 ntBASIC20.53■□□□□ 0.88
Msh6P54276 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Msh6P54276 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 Gm37500-201ENSMUST00000192059 1443 ntBASIC20.53■□□□□ 0.88
Msh6P54276 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msh6P54276 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Msh6P54276 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Msh6P54276 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Msh6P54276 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms