Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Shmt1P50431 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Shmt1P50431 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Shmt1P50431 AC133598.3-202ENSMUST00000224219 531 ntBASIC17.2■□□□□ 0.34
Shmt1P50431 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Spr-ps1-201ENSMUST00000089584 605 ntBASIC17.2■□□□□ 0.34
Shmt1P50431 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Shmt1P50431 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Shmt1P50431 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Shmt1P50431 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Shmt1P50431 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Shmt1P50431 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Gm24589-201ENSMUST00000116692 94 ntBASIC17.19■□□□□ 0.34
Shmt1P50431 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Shmt1P50431 Gm34391-201ENSMUST00000203706 907 ntBASIC17.19■□□□□ 0.34
Shmt1P50431 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.19■□□□□ 0.34
Shmt1P50431 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
Shmt1P50431 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
Shmt1P50431 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Shmt1P50431 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Shmt1P50431 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.18■□□□□ 0.34
Shmt1P50431 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.18■□□□□ 0.34
Shmt1P50431 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC17.18■□□□□ 0.34
Shmt1P50431 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Shmt1P50431 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC17.18■□□□□ 0.34
Shmt1P50431 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Shmt1P50431 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Shmt1P50431 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Shmt1P50431 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Shmt1P50431 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Shmt1P50431 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Shmt1P50431 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Shmt1P50431 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Shmt1P50431 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Shmt1P50431 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Shmt1P50431 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.17■□□□□ 0.34
Shmt1P50431 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Shmt1P50431 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Shmt1P50431 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Shmt1P50431 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Shmt1P50431 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.17■□□□□ 0.34
Shmt1P50431 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Shmt1P50431 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Shmt1P50431 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Shmt1P50431 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
Shmt1P50431 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Rprl3-201ENSMUST00000157400 290 ntBASIC17.16■□□□□ 0.34
Shmt1P50431 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.16■□□□□ 0.34
Shmt1P50431 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.16■□□□□ 0.34
Shmt1P50431 Gm27867-201ENSMUST00000184778 125 ntBASIC17.16■□□□□ 0.34
Shmt1P50431 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Shmt1P50431 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.16■□□□□ 0.34
Shmt1P50431 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms