Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
Cdx1P18111 Gm11620-201ENSMUST00000118770 1845 ntBASIC13.19□□□□□ -0.3
Cdx1P18111 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC13.19□□□□□ -0.3
Cdx1P18111 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC13.19□□□□□ -0.3
Cdx1P18111 Krtap5-1-202ENSMUST00000188274 742 ntBASIC13.19□□□□□ -0.3
Cdx1P18111 Gm29994-201ENSMUST00000195495 1193 ntBASIC13.19□□□□□ -0.3
Cdx1P18111 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC13.19□□□□□ -0.3
Cdx1P18111 Wnt10b-205ENSMUST00000226846 1204 ntBASIC13.19□□□□□ -0.3
Cdx1P18111 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Gm45760-201ENSMUST00000212190 1782 ntBASIC13.19□□□□□ -0.3
Cdx1P18111 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Cdx1P18111 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Cdx1P18111 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cdx1P18111 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Cdx1P18111 CT010444.2-201ENSMUST00000217877 1629 ntBASIC13.18□□□□□ -0.3
Cdx1P18111 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
Cdx1P18111 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC13.18□□□□□ -0.3
Cdx1P18111 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Cdx1P18111 Gm37055-201ENSMUST00000191866 133 ntBASIC13.18□□□□□ -0.3
Cdx1P18111 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Cdx1P18111 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Cdx1P18111 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cdx1P18111 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cdx1P18111 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC13.18□□□□□ -0.3
Cdx1P18111 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cdx1P18111 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cdx1P18111 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC13.17□□□□□ -0.3
Cdx1P18111 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Cdx1P18111 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC13.17□□□□□ -0.3
Cdx1P18111 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC13.17□□□□□ -0.3
Cdx1P18111 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Gm43072-201ENSMUST00000200283 1671 ntBASIC13.17□□□□□ -0.3
Cdx1P18111 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Cdx1P18111 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cdx1P18111 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Cdx1P18111 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Cdx1P18111 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Cdx1P18111 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Cdx1P18111 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC13.16□□□□□ -0.3
Cdx1P18111 Gm11927-201ENSMUST00000118472 759 ntBASIC13.16□□□□□ -0.3
Cdx1P18111 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms