Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
RaraP11416 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RaraP11416 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
RaraP11416 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Gm11336-201ENSMUST00000118168 334 ntBASIC17.63■□□□□ 0.41
RaraP11416 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC17.63■□□□□ 0.41
RaraP11416 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.63■□□□□ 0.41
RaraP11416 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
RaraP11416 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RaraP11416 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
RaraP11416 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RaraP11416 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.62■□□□□ 0.41
RaraP11416 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC17.62■□□□□ 0.41
RaraP11416 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RaraP11416 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RaraP11416 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.62■□□□□ 0.41
RaraP11416 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC17.62■□□□□ 0.41
RaraP11416 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.62■□□□□ 0.41
RaraP11416 Gm36967-201ENSMUST00000193814 266 ntBASIC17.62■□□□□ 0.41
RaraP11416 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC17.62■□□□□ 0.41
RaraP11416 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.62■□□□□ 0.41
RaraP11416 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RaraP11416 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RaraP11416 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC17.62■□□□□ 0.41
RaraP11416 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RaraP11416 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RaraP11416 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.62■□□□□ 0.41
RaraP11416 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RaraP11416 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.61■□□□□ 0.41
RaraP11416 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RaraP11416 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Gm13474-201ENSMUST00000122466 815 ntBASIC17.61■□□□□ 0.41
RaraP11416 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RaraP11416 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.6■□□□□ 0.41
RaraP11416 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RaraP11416 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RaraP11416 Prob1-201ENSMUST00000097619 3021 ntBASIC17.6■□□□□ 0.41
RaraP11416 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RaraP11416 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.6■□□□□ 0.41
RaraP11416 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RaraP11416 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms