Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Hoxd3P09027 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Hoxd3P09027 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
Hoxd3P09027 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Hoxd3P09027 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Hoxd3P09027 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Hoxd3P09027 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Hoxd3P09027 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Hoxd3P09027 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC12.65□□□□□ -0.38
Hoxd3P09027 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Hoxd3P09027 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC12.65□□□□□ -0.38
Hoxd3P09027 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC12.65□□□□□ -0.38
Hoxd3P09027 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Hoxd3P09027 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Hoxd3P09027 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Hoxd3P09027 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
Hoxd3P09027 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Hoxd3P09027 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Gm45412-201ENSMUST00000210217 2275 ntBASIC12.64□□□□□ -0.39
Hoxd3P09027 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC12.64□□□□□ -0.39
Hoxd3P09027 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Hoxd3P09027 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Hoxd3P09027 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Gm15442-201ENSMUST00000117905 1527 ntBASIC12.64□□□□□ -0.39
Hoxd3P09027 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
Hoxd3P09027 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Hoxd3P09027 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Hoxd3P09027 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Hoxd3P09027 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
Hoxd3P09027 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Hoxd3P09027 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Hoxd3P09027 Gm12895-201ENSMUST00000122214 226 ntBASIC12.63□□□□□ -0.39
Hoxd3P09027 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC12.63□□□□□ -0.39
Hoxd3P09027 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC12.63□□□□□ -0.39
Hoxd3P09027 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC12.63□□□□□ -0.39
Hoxd3P09027 AC153889.1-201ENSMUST00000219257 330 ntBASIC12.63□□□□□ -0.39
Hoxd3P09027 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Hoxd3P09027 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC12.63□□□□□ -0.39
Hoxd3P09027 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Hoxd3P09027 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC12.62□□□□□ -0.39
Hoxd3P09027 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC12.62□□□□□ -0.39
Hoxd3P09027 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Hoxd3P09027 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC12.62□□□□□ -0.39
Hoxd3P09027 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms