Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC19.34■□□□□ 0.69
Col3a1P08121 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC19.34■□□□□ 0.69
Col3a1P08121 Gm42670-201ENSMUST00000201816 1292 ntBASIC19.34■□□□□ 0.69
Col3a1P08121 Gm43935-201ENSMUST00000203569 1050 ntBASIC19.34■□□□□ 0.69
Col3a1P08121 AC154222.1-201ENSMUST00000223882 475 ntBASIC19.34■□□□□ 0.69
Col3a1P08121 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col3a1P08121 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Col3a1P08121 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col3a1P08121 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col3a1P08121 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Col3a1P08121 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Col3a1P08121 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col3a1P08121 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Col3a1P08121 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col3a1P08121 Gm4609-201ENSMUST00000106443 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm5138-201ENSMUST00000113842 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm15191-201ENSMUST00000117933 1000 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm12182-201ENSMUST00000118655 1008 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm6184-201ENSMUST00000120403 1261 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm13882-201ENSMUST00000120886 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col3a1P08121 Gm10284-201ENSMUST00000145057 1005 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm10481-201ENSMUST00000179228 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm2574-201ENSMUST00000181051 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm3200-201ENSMUST00000181493 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm8825-201ENSMUST00000182565 998 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm4518-201ENSMUST00000182638 718 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm8330-201ENSMUST00000182754 1008 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm4575-201ENSMUST00000182991 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm8709-201ENSMUST00000183230 1012 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Col3a1P08121 Gm10293-201ENSMUST00000076317 1002 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Gm6316-201ENSMUST00000082064 1020 ntBASIC19.33■□□□□ 0.68
Col3a1P08121 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col3a1P08121 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Col3a1P08121 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Col3a1P08121 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Col3a1P08121 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC19.32■□□□□ 0.68
Col3a1P08121 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Col3a1P08121 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
Col3a1P08121 Gm2308-201ENSMUST00000166539 1004 ntBASIC19.32■□□□□ 0.68
Col3a1P08121 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC19.32■□□□□ 0.68
Col3a1P08121 Gm43332-201ENSMUST00000202511 1044 ntBASIC19.32■□□□□ 0.68
Col3a1P08121 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC19.32■□□□□ 0.68
Col3a1P08121 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Col3a1P08121 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col3a1P08121 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Col3a1P08121 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC19.31■□□□□ 0.68
Col3a1P08121 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col3a1P08121 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col3a1P08121 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col3a1P08121 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC19.31■□□□□ 0.68
Col3a1P08121 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Col3a1P08121 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC19.31■□□□□ 0.68
Col3a1P08121 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col3a1P08121 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC19.31■□□□□ 0.68
Col3a1P08121 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col3a1P08121 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col3a1P08121 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col3a1P08121 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col3a1P08121 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.3■□□□□ 0.68
Col3a1P08121 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC19.3■□□□□ 0.68
Col3a1P08121 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC19.3■□□□□ 0.68
Col3a1P08121 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC19.3■□□□□ 0.68
Col3a1P08121 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Col3a1P08121 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC19.3■□□□□ 0.68
Col3a1P08121 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col3a1P08121 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC19.29■□□□□ 0.68
Col3a1P08121 Gm4995-201ENSMUST00000117247 432 ntBASIC19.29■□□□□ 0.68
Col3a1P08121 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms