Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Nr1i3O35627 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Nr1i3O35627 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Nr1i3O35627 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Nr1i3O35627 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Nr1i3O35627 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC17.52■□□□□ 0.39
Nr1i3O35627 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Nr1i3O35627 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Nr1i3O35627 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Nr1i3O35627 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Nr1i3O35627 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.51■□□□□ 0.39
Nr1i3O35627 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
Nr1i3O35627 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.51■□□□□ 0.39
Nr1i3O35627 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Nr1i3O35627 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Nr1i3O35627 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Nr1i3O35627 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 CT010478.1-201ENSMUST00000220747 2787 ntBASIC17.5■□□□□ 0.39
Nr1i3O35627 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.5■□□□□ 0.39
Nr1i3O35627 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Nr1i3O35627 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.49■□□□□ 0.39
Nr1i3O35627 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.49■□□□□ 0.39
Nr1i3O35627 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.49■□□□□ 0.39
Nr1i3O35627 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Nr1i3O35627 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 AC112142.1-201ENSMUST00000228796 918 ntBASIC17.49■□□□□ 0.39
Nr1i3O35627 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.49■□□□□ 0.39
Nr1i3O35627 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Nr1i3O35627 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.49■□□□□ 0.39
Nr1i3O35627 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Nr1i3O35627 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.48■□□□□ 0.39
Nr1i3O35627 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.48■□□□□ 0.39
Nr1i3O35627 Gm18959-201ENSMUST00000208954 655 ntBASIC17.48■□□□□ 0.39
Nr1i3O35627 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Nr1i3O35627 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Nr1i3O35627 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Nr1i3O35627 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.47■□□□□ 0.39
Nr1i3O35627 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms