Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC15.31■□□□□ 0.04
Cx3cl1O35188 AC154471.1-201ENSMUST00000224418 436 ntBASIC15.31■□□□□ 0.04
Cx3cl1O35188 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Cx3cl1O35188 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Gm27704-201ENSMUST00000185094 107 ntBASIC15.3■□□□□ 0.04
Cx3cl1O35188 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Zkscan4-202ENSMUST00000225845 1506 ntBASIC15.3■□□□□ 0.04
Cx3cl1O35188 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC15.3■□□□□ 0.04
Cx3cl1O35188 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Gm8839-201ENSMUST00000121279 1645 ntBASIC15.29■□□□□ 0.04
Cx3cl1O35188 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC15.29■□□□□ 0.04
Cx3cl1O35188 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC15.29■□□□□ 0.04
Cx3cl1O35188 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Gm36858-201ENSMUST00000194501 2391 ntBASIC15.29■□□□□ 0.04
Cx3cl1O35188 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cx3cl1O35188 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Gm7284-201ENSMUST00000131667 944 ntBASIC15.28■□□□□ 0.04
Cx3cl1O35188 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Cx3cl1O35188 AC130713.1-201ENSMUST00000228853 1096 ntBASIC15.28■□□□□ 0.04
Cx3cl1O35188 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cx3cl1O35188 Haglr-201ENSMUST00000100000 2085 ntBASIC15.28■□□□□ 0.04
Cx3cl1O35188 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cx3cl1O35188 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms