Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Pcdh1F7BJK1 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC14.69□□□□□ -0.06
Pcdh1F7BJK1 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Pcdh1F7BJK1 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Pcdh1F7BJK1 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Pcdh1F7BJK1 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Pcdh1F7BJK1 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Gm13181-201ENSMUST00000120117 1069 ntBASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Pcdh1F7BJK1 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC14.67□□□□□ -0.06
Pcdh1F7BJK1 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Gm13186-201ENSMUST00000118031 316 ntBASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Pcdh1F7BJK1 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC14.65□□□□□ -0.06
Pcdh1F7BJK1 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms