Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Pcdhgb8A0A140LI48 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Pcdhgb8A0A140LI48 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Pcdhgb8A0A140LI48 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Pcdhgb8A0A140LI48 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Gm24841-201ENSMUST00000158676 357 ntBASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Pcdhgb8A0A140LI48 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Pcdhgb8A0A140LI48 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Gm2274-201ENSMUST00000184539 609 ntBASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Gm18959-201ENSMUST00000208954 655 ntBASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms