Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Gm5297-201ENSMUST00000198555 1171 ntBASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trbv3A0A0A6YYE2 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 App-207ENSMUST00000227737 2827 ntBASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Gm42555-201ENSMUST00000199304 1039 ntBASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 AC159205.3-201ENSMUST00000224614 874 ntBASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trbv3A0A0A6YYE2 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Gm10584-201ENSMUST00000207036 2628 ntBASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trbv3A0A0A6YYE2 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC12.58□□□□□ -0.39
Trbv3A0A0A6YYE2 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Trbv3A0A0A6YYE2 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Alkbh1-212ENSMUST00000185301 408 ntBASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Trbv3A0A0A6YYE2 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms