Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Gm15565-201ENSMUST00000118890 427 ntBASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Gm27389-201ENSMUST00000183622 195 ntBASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Gm21559-201ENSMUST00000220638 855 ntBASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Gm8587-201ENSMUST00000076538 843 ntBASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
Trav1A0A075B5Z4 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav1A0A075B5Z4 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 AC133083.1-201ENSMUST00000221736 2209 ntBASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav1A0A075B5Z4 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Gm6433-201ENSMUST00000118634 875 ntBASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav1A0A075B5Z4 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 AC153526.5-201ENSMUST00000218661 2147 ntBASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Gm22697-201ENSMUST00000175194 63 ntBASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav1A0A075B5Z4 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms