Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col8a1Q00780 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.95■□□□□ 0.78
Col8a1Q00780 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col8a1Q00780 AC151971.4-201ENSMUST00000214717 704 ntBASIC19.95■□□□□ 0.78
Col8a1Q00780 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC19.95■□□□□ 0.78
Col8a1Q00780 Gm5921-201ENSMUST00000075898 882 ntBASIC19.95■□□□□ 0.78
Col8a1Q00780 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col8a1Q00780 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.94■□□□□ 0.78
Col8a1Q00780 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col8a1Q00780 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col8a1Q00780 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC19.93■□□□□ 0.78
Col8a1Q00780 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col8a1Q00780 Gm10420-201ENSMUST00000121713 882 ntBASIC19.92■□□□□ 0.78
Col8a1Q00780 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col8a1Q00780 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col8a1Q00780 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col8a1Q00780 Gm9910-201ENSMUST00000195385 1550 ntBASIC19.91■□□□□ 0.78
Col8a1Q00780 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19.9■□□□□ 0.78
Col8a1Q00780 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col8a1Q00780 Gm12818-201ENSMUST00000117562 1349 ntBASIC19.9■□□□□ 0.78
Col8a1Q00780 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col8a1Q00780 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col8a1Q00780 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col8a1Q00780 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col8a1Q00780 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col8a1Q00780 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC19.89■□□□□ 0.77
Col8a1Q00780 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col8a1Q00780 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Col8a1Q00780 Gm13889-201ENSMUST00000099689 1386 ntBASIC19.88■□□□□ 0.77
Col8a1Q00780 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC19.88■□□□□ 0.77
Col8a1Q00780 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col8a1Q00780 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC19.88■□□□□ 0.77
Col8a1Q00780 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.87■□□□□ 0.77
Col8a1Q00780 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col8a1Q00780 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC19.86■□□□□ 0.77
Col8a1Q00780 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Col8a1Q00780 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.86■□□□□ 0.77
Col8a1Q00780 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col8a1Q00780 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col8a1Q00780 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.85■□□□□ 0.77
Col8a1Q00780 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col8a1Q00780 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col8a1Q00780 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC19.85■□□□□ 0.77
Col8a1Q00780 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.85■□□□□ 0.77
Col8a1Q00780 Gm37136-201ENSMUST00000194368 194 ntBASIC19.85■□□□□ 0.77
Col8a1Q00780 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.85■□□□□ 0.77
Col8a1Q00780 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col8a1Q00780 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Col8a1Q00780 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col8a1Q00780 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col8a1Q00780 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col8a1Q00780 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col8a1Q00780 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC19.82■□□□□ 0.76
Col8a1Q00780 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col8a1Q00780 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col8a1Q00780 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col8a1Q00780 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Col8a1Q00780 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col8a1Q00780 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col8a1Q00780 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Col8a1Q00780 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col8a1Q00780 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col8a1Q00780 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col8a1Q00780 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col8a1Q00780 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Col8a1Q00780 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col8a1Q00780 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col8a1Q00780 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Col8a1Q00780 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Col8a1Q00780 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col8a1Q00780 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col8a1Q00780 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col8a1Q00780 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Col8a1Q00780 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col8a1Q00780 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.76■□□□□ 0.75
Col8a1Q00780 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Col8a1Q00780 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col8a1Q00780 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col8a1Q00780 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col8a1Q00780 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC19.75■□□□□ 0.75
Col8a1Q00780 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col8a1Q00780 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col8a1Q00780 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.73■□□□□ 0.75
Col8a1Q00780 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.73■□□□□ 0.75
Col8a1Q00780 Gm15820-201ENSMUST00000201566 728 ntBASIC19.73■□□□□ 0.75
Col8a1Q00780 Rps24-207ENSMUST00000224568 714 ntBASIC19.73■□□□□ 0.75
Col8a1Q00780 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col8a1Q00780 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col8a1Q00780 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col8a1Q00780 Gm9905-201ENSMUST00000065740 1845 ntBASIC19.72■□□□□ 0.75
Col8a1Q00780 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col8a1Q00780 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC19.71■□□□□ 0.75
Col8a1Q00780 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col8a1Q00780 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col8a1Q00780 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.7■□□□□ 0.74
Col8a1Q00780 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col8a1Q00780 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC19.7■□□□□ 0.74
Col8a1Q00780 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC19.69■□□□□ 0.74
Col8a1Q00780 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC19.69■□□□□ 0.74
Col8a1Q00780 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms