Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 AC090971.4-201ENST00000560291 1800 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 KPNA2P1-201ENST00000458289 1591 ntBASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC5.25□□□□□ -1.57
CCDC39Q9UFE4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC005592.1-201ENST00000566527 1640 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC121333.1-201ENST00000567488 2709 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AL139276.1-201ENST00000311910 1001 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 Y_RNA.288-201ENST00000364854 92 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 RN7SKP100-201ENST00000411258 284 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 RNU2-6P-201ENST00000411404 190 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC140479.3-201ENST00000418944 1126 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 OR2AS1P-201ENST00000427827 319 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 IGKV1OR-3-201ENST00000446944 348 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AL451050.1-201ENST00000450126 415 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 RNU7-180P-201ENST00000459240 63 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 RPS3AP41-201ENST00000462701 778 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AL049714.1-201ENST00000466686 347 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 RNU6-256P-201ENST00000516747 97 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 MIR3146-201ENST00000580367 79 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AL121992.2-201ENST00000606262 256 ntBASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC39Q9UFE4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC011266.1-201ENST00000624119 3569 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AL512646.1-201ENST00000269395 1077 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 SNORA74A-201ENST00000364089 198 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 Y_RNA.212-201ENST00000364177 102 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 RNU6-472P-201ENST00000384299 107 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AL031679.1-201ENST00000400616 525 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 MIR548I2-201ENST00000408348 149 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 RNA5SP39-201ENST00000411245 120 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC005154.2-201ENST00000438110 379 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 RPL36AP15-201ENST00000444514 266 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AP003497.1-201ENST00000528472 562 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC128657.1-201ENST00000549459 145 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AL110118.1-201ENST00000553543 400 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 CYP4A43P-201ENST00000568156 121 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 OR1F2P-201ENST00000570470 933 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC138761.3-201ENST00000579993 334 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 MIR4737-201ENST00000583979 81 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC091178.1-203ENST00000584586 279 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 Z82243.1-201ENST00000609432 473 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 MIR6853-201ENST00000619642 74 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 MIR8062-201ENST00000621515 85 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 U6.101-201ENST00000637707 76 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 AC008013.2-202ENST00000637965 364 ntBASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CCDC39Q9UFE4 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC016588.2-201ENST00000632484 3021 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 Y_RNA.22-201ENST00000362492 102 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 Y_RNA.350-201ENST00000365409 98 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 RNU6-39P-201ENST00000384344 107 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 OR6C66P-201ENST00000414917 930 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AC092832.1-201ENST00000422934 400 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 RAC1P6-201ENST00000423911 575 ntBASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.22□□□□□ -1.57
CCDC39Q9UFE4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms