Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 SNRPGP13-201ENST00000442212 177 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 CASP3P1-201ENST00000446037 609 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 SMARCE1P4-201ENST00000523647 241 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 MIR4448-201ENST00000584360 86 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AL359851.1-201ENST00000569460 4997 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 U3.15-201ENST00000365398 212 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 MTND2P16-201ENST00000419987 799 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AC025755.1-201ENST00000521306 278 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 MTND2P13-201ENST00000577438 1039 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 GLUD1P4-201ENST00000590914 418 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AC013553.2-201ENST00000604244 589 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AL049779.4-201ENST00000604500 156 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AC111188.2-201ENST00000529697 1387 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 AC007256.1-201ENST00000392253 2765 ntBASIC1.31□□□□□ -2.2
CHD9Q3L8U1 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
CHD9Q3L8U1 DUXAP5-201ENST00000529668 529 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 AC068338.1-201ENST00000565567 176 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 MAGOH2P-202ENST00000584384 429 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.3□□□□□ -2.2
CHD9Q3L8U1 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.3□□□□□ -2.2
CHD9Q3L8U1 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
CHD9Q3L8U1 RNA5SP139-201ENST00000364340 117 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 RNU4-91P-201ENST00000364778 135 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 AL589994.1-201ENST00000404962 340 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 RNU6-516P-201ENST00000411381 104 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 Z85994.2-201ENST00000434327 452 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 THAP5P1-201ENST00000439089 262 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 RNA5SP476-201ENST00000516613 103 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 AC010200.2-201ENST00000605098 235 ntBASIC1.3□□□□□ -2.2
CHD9Q3L8U1 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
CHD9Q3L8U1 Y_RNA.433-201ENST00000384089 102 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 TRAPPC2P5-201ENST00000426293 308 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 UBE2V1P13-201ENST00000436983 439 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 RNU6-1132P-201ENST00000459214 107 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC011890.2-201ENST00000613393 294 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AL121594.5-201ENST00000631724 573 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC108059.3-201ENST00000456388 214 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 SNRPFP3-201ENST00000457792 225 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC012170.1-201ENST00000495139 359 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 RNU6-1105P-201ENST00000384774 107 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC073464.3-201ENST00000422564 712 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC006270.2-201ENST00000578523 652 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC007229.1-201ENST00000590455 412 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC012213.4-201ENST00000606457 354 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC097468.3-201ENST00000607956 456 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 AC010809.3-201ENST00000621310 641 ntBASIC1.29□□□□□ -2.2
CHD9Q3L8U1 RNU4-7P-201ENST00000364758 141 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 PRELID3BP11-201ENST00000414230 479 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC009961.3-201ENST00000449832 765 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC067838.1-201ENST00000606064 577 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC021755.4-201ENST00000616620 456 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AL356118.1-201ENST00000635272 1078 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 HSPE1P11-201ENST00000339579 310 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 TRAPPC2P10-201ENST00000415662 323 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 TRBV8-1-201ENST00000481590 279 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC006499.2-201ENST00000513470 337 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 CBX3P8-201ENST00000532412 525 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC068714.1-201ENST00000559623 800 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC1.28□□□□□ -2.2
CHD9Q3L8U1 AL713998.2-201ENST00000604538 1198 ntBASIC1.28□□□□□ -2.2
CHD9Q3L8U1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.28□□□□□ -2.21
CHD9Q3L8U1 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
CHD9Q3L8U1 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 RNA5SP457-201ENST00000363657 124 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 RNU6-225P-201ENST00000384613 103 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 HMGN2P38-201ENST00000423806 265 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 SNRPFP2-201ENST00000440710 251 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC090821.2-201ENST00000523552 176 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AL109653.1-201ENST00000603091 248 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC083899.3-201ENST00000603413 594 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms