Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.65□□□□□ -1.99
BRCA1P38398 RPL36AP33-201ENST00000450395 310 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.65□□□□□ -1.99
BRCA1P38398 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.65□□□□□ -1.99
BRCA1P38398 AC025768.1-201ENST00000510057 267 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.65□□□□□ -1.99
BRCA1P38398 AP000790.1-201ENST00000528891 737 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC2.65□□□□□ -1.99
BRCA1P38398 AC007536.1-201ENST00000533382 349 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.65□□□□□ -1.99
BRCA1P38398 AC011611.5-201ENST00000552477 578 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 MIR4474-201ENST00000579189 78 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 AL627309.6-201ENST00000606857 840 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 AL451074.6-201ENST00000608512 729 ntBASIC2.65□□□□□ -1.99
BRCA1P38398 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.65□□□□□ -1.99
BRCA1P38398 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.64□□□□□ -1.99
BRCA1P38398 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.64□□□□□ -1.99
BRCA1P38398 RNU6-457P-201ENST00000363999 107 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AP000567.1-201ENST00000406413 156 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 RNU6-712P-201ENST00000410558 100 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.64□□□□□ -1.99
BRCA1P38398 RAD23BP2-201ENST00000416003 1207 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 MRPL42P4-201ENST00000453267 443 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.64□□□□□ -1.99
BRCA1P38398 AC108729.2-201ENST00000476543 840 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AC004263.1-201ENST00000479327 332 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 OR52A4P-202ENST00000481634 799 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AC084024.2-201ENST00000503480 791 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AC118282.2-201ENST00000508739 374 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.64□□□□□ -1.99
BRCA1P38398 AC022690.1-201ENST00000526681 550 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.64□□□□□ -1.99
BRCA1P38398 AC104307.1-201ENST00000616142 196 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AP000943.4-201ENST00000622912 357 ntBASIC2.64□□□□□ -1.99
BRCA1P38398 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.64□□□□□ -1.99
BRCA1P38398 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2.63□□□□□ -1.99
BRCA1P38398 AC016716.1-201ENST00000265882 708 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.63□□□□□ -1.99
BRCA1P38398 AL450338.1-201ENST00000407987 512 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 YWHAZP7-201ENST00000436906 631 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 MTND2P19-201ENST00000449129 1012 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 AL353718.1-201ENST00000451028 517 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 AC093767.1-201ENST00000504523 156 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.63□□□□□ -1.99
BRCA1P38398 RNU6-1053P-201ENST00000515930 101 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 HMGB1P41-201ENST00000520234 440 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC2.63□□□□□ -1.99
BRCA1P38398 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.63□□□□□ -1.99
BRCA1P38398 AC078814.3-201ENST00000553036 491 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.63□□□□□ -1.99
BRCA1P38398 DNAJC8P1-201ENST00000554535 372 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 AL359198.2-201ENST00000611836 194 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.63□□□□□ -1.99
BRCA1P38398 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.63□□□□□ -1.99
BRCA1P38398 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
BRCA1P38398 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
BRCA1P38398 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
BRCA1P38398 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
BRCA1P38398 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.62□□□□□ -1.99
BRCA1P38398 MIR489-201ENST00000384923 84 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 SSXP10-201ENST00000402595 565 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 RNU4-78P-201ENST00000410940 126 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 RNA5SP270-201ENST00000411361 118 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 RABEPKP1-201ENST00000440529 1026 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.62□□□□□ -1.99
BRCA1P38398 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC2.62□□□□□ -1.99
BRCA1P38398 AC112518.2-201ENST00000508565 425 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 SNORA31.20-201ENST00000517111 133 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.62□□□□□ -1.99
BRCA1P38398 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.62□□□□□ -1.99
BRCA1P38398 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 IGJP1-201ENST00000522682 475 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 OR10V3P-201ENST00000525712 725 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.62□□□□□ -1.99
BRCA1P38398 GLUD1P4-201ENST00000590914 418 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 BNIP3P24-201ENST00000593398 557 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
BRCA1P38398 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
BRCA1P38398 AC244517.12-201ENST00000623581 663 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 CU459211.1-201ENST00000635667 749 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.62□□□□□ -1.99
BRCA1P38398 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
BRCA1P38398 AC090740.1-201ENST00000623193 2262 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 MIR378A-201ENST00000362177 66 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 RNY1P10-201ENST00000363268 113 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
BRCA1P38398 MIR518E-201ENST00000385252 88 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 MIR591-201ENST00000385290 95 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 RNU1-101P-201ENST00000391171 127 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.62□□□□□ -1.99
BRCA1P38398 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.62□□□□□ -1.99
BRCA1P38398 AL445646.1-201ENST00000431784 216 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 MOB1AP2-201ENST00000446060 614 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.62□□□□□ -1.99
BRCA1P38398 RPS27P27-201ENST00000498779 255 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 AC010265.1-201ENST00000513509 211 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 AP003385.6-201ENST00000531603 374 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 CR383656.7-201ENST00000548164 174 ntBASIC2.62□□□□□ -1.99
BRCA1P38398 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 178.4 ms