Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.09□□□□□ -1.91
PTPN4P29074 RNY4P37-201ENST00000516225 96 ntBASIC3.09□□□□□ -1.91
PTPN4P29074 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.09□□□□□ -1.91
PTPN4P29074 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.09□□□□□ -1.91
PTPN4P29074 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.09□□□□□ -1.91
PTPN4P29074 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.09□□□□□ -1.91
PTPN4P29074 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.09□□□□□ -1.91
PTPN4P29074 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.09□□□□□ -1.91
PTPN4P29074 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.09□□□□□ -1.91
PTPN4P29074 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.09□□□□□ -1.91
PTPN4P29074 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.09□□□□□ -1.91
PTPN4P29074 BBIP1P1-201ENST00000602999 279 ntBASIC3.09□□□□□ -1.91
PTPN4P29074 AC013244.3-201ENST00000605614 388 ntBASIC3.09□□□□□ -1.91
PTPN4P29074 AL390208.1-201ENST00000605885 644 ntBASIC3.09□□□□□ -1.91
PTPN4P29074 AL157817.1-201ENST00000614264 790 ntBASIC3.09□□□□□ -1.91
PTPN4P29074 MIR6130-201ENST00000619419 109 ntBASIC3.09□□□□□ -1.91
PTPN4P29074 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.09□□□□□ -1.91
PTPN4P29074 AC116618.1-201ENST00000634617 774 ntBASIC3.09□□□□□ -1.91
PTPN4P29074 AC006927.4-201ENST00000639187 543 ntBASIC3.09□□□□□ -1.91
PTPN4P29074 ZNF876P-202ENST00000398732 1485 ntBASIC3.09□□□□□ -1.92
PTPN4P29074 MTCO1P9-201ENST00000505577 1534 ntBASIC3.09□□□□□ -1.92
PTPN4P29074 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
PTPN4P29074 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.08□□□□□ -1.92
PTPN4P29074 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
PTPN4P29074 AC008568.2-201ENST00000623862 2313 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
PTPN4P29074 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PTPN4P29074 RNU4-28P-201ENST00000364739 141 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 RNU6-359P-201ENST00000365466 108 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
PTPN4P29074 MIR181B1-201ENST00000385240 110 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 RNU2-47P-201ENST00000410649 186 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.08□□□□□ -1.92
PTPN4P29074 RAC1P7-201ENST00000445367 377 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.08□□□□□ -1.92
PTPN4P29074 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 AL031183.1-201ENST00000457667 207 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 RNU7-136P-201ENST00000458819 69 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 AC021146.8-201ENST00000507455 733 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 AC093677.1-201ENST00000514414 678 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.08□□□□□ -1.92
PTPN4P29074 RNA5SP341-201ENST00000516261 117 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 RNA5SP76-201ENST00000516277 87 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 SNORA70.16-201ENST00000516390 95 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 RNU1-103P-201ENST00000516502 125 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PTPN4P29074 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.08□□□□□ -1.92
PTPN4P29074 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.08□□□□□ -1.92
PTPN4P29074 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.08□□□□□ -1.92
PTPN4P29074 AL353997.4-201ENST00000586196 166 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AC061975.8-201ENST00000587058 721 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AC234772.3-201ENST00000602277 528 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AL592221.1-201ENST00000605266 382 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AC026422.1-201ENST00000623961 452 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
PTPN4P29074 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PTPN4P29074 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PTPN4P29074 FAM35BP-202ENST00000497389 3337 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AP000776.1-201ENST00000530032 1663 ntBASIC3.08□□□□□ -1.92
PTPN4P29074 AC087359.1-201ENST00000508335 1740 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.07□□□□□ -1.92
PTPN4P29074 MIR422A-201ENST00000362286 90 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 MTCYBP38-201ENST00000417160 1123 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 ATG3P1-201ENST00000419507 911 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.07□□□□□ -1.92
PTPN4P29074 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.07□□□□□ -1.92
PTPN4P29074 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PTPN4P29074 TRIM60P18-201ENST00000441518 828 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PTPN4P29074 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.07□□□□□ -1.92
PTPN4P29074 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.07□□□□□ -1.92
PTPN4P29074 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.07□□□□□ -1.92
PTPN4P29074 AP001486.1-201ENST00000463339 476 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.07□□□□□ -1.92
PTPN4P29074 AL049873.1-201ENST00000480540 376 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 AC006445.1-201ENST00000491925 405 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.07□□□□□ -1.92
PTPN4P29074 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.07□□□□□ -1.92
PTPN4P29074 AC010587.2-201ENST00000511727 448 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.07□□□□□ -1.92
PTPN4P29074 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.07□□□□□ -1.92
PTPN4P29074 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
PTPN4P29074 AC023050.2-201ENST00000544968 387 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 CYCSP2-201ENST00000558168 301 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.07□□□□□ -1.92
PTPN4P29074 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.07□□□□□ -1.92
PTPN4P29074 VN1R82P-201ENST00000601481 356 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 MAPK10-322ENST00000641485 4530 ntBASIC3.07□□□□□ -1.92
PTPN4P29074 AP003122.5-201ENST00000527668 3766 ntBASIC3.06□□□□□ -1.92
PTPN4P29074 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.06□□□□□ -1.92
PTPN4P29074 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
PTPN4P29074 TPTE2P4-201ENST00000258589 1605 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms