Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AF274854.1-201ENST00000413236 615 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 RPL31P2-201ENST00000413849 377 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.1□□□□□ -2.23
COL7A1Q02388 AL354695.1-201ENST00000427935 228 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 AC092989.1-201ENST00000481235 277 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.1□□□□□ -2.23
COL7A1Q02388 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL7A1Q02388 AC024614.2-201ENST00000577584 372 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 MIR502-201ENST00000606349 86 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.1□□□□□ -2.23
COL7A1Q02388 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.1□□□□□ -2.23
COL7A1Q02388 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
COL7A1Q02388 Y_RNA.294-201ENST00000364916 102 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
COL7A1Q02388 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.1□□□□□ -2.23
COL7A1Q02388 AC021382.1-201ENST00000483523 359 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 HMGB1P47-201ENST00000511281 589 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.1□□□□□ -2.23
COL7A1Q02388 AC092954.1-201ENST00000609121 445 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.1□□□□□ -2.23
COL7A1Q02388 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
COL7A1Q02388 NUP58P1-201ENST00000502546 1738 ntBASIC1.1□□□□□ -2.23
COL7A1Q02388 RNU1-22P-201ENST00000363334 158 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.09□□□□□ -2.23
COL7A1Q02388 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.09□□□□□ -2.23
COL7A1Q02388 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.09□□□□□ -2.23
COL7A1Q02388 MIR4448-201ENST00000584360 86 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 AC096772.1-201ENST00000609146 564 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.09□□□□□ -2.23
COL7A1Q02388 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC1.09□□□□□ -2.23
COL7A1Q02388 DDX43P2-201ENST00000604753 1354 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.23
COL7A1Q02388 RNA5SP363-201ENST00000365072 115 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
COL7A1Q02388 RNU6-882P-201ENST00000391025 103 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.09□□□□□ -2.23
COL7A1Q02388 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC1.09□□□□□ -2.23
COL7A1Q02388 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.09□□□□□ -2.23
COL7A1Q02388 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.09□□□□□ -2.23
COL7A1Q02388 MTND1P18-201ENST00000448191 573 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 snoU13.3-201ENST00000459441 104 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.09□□□□□ -2.23
COL7A1Q02388 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.09□□□□□ -2.23
COL7A1Q02388 MKKS-204ENST00000639674 192 ntBASIC1.09□□□□□ -2.23
COL7A1Q02388 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.09□□□□□ -2.24
COL7A1Q02388 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
COL7A1Q02388 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.09□□□□□ -2.24
COL7A1Q02388 Y_RNA.390-201ENST00000383932 102 ntBASIC1.09□□□□□ -2.24
COL7A1Q02388 HMGB1P13-201ENST00000406019 642 ntBASIC1.09□□□□□ -2.24
COL7A1Q02388 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC1.09□□□□□ -2.24
COL7A1Q02388 THAP5P1-201ENST00000439089 262 ntBASIC1.09□□□□□ -2.24
COL7A1Q02388 AC096992.1-201ENST00000459808 709 ntBASIC1.09□□□□□ -2.24
COL7A1Q02388 AC008127.2-201ENST00000549925 1075 ntBASIC1.09□□□□□ -2.24
COL7A1Q02388 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC1.09□□□□□ -2.24
COL7A1Q02388 BNIP3P4-201ENST00000604946 565 ntBASIC1.09□□□□□ -2.24
COL7A1Q02388 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
COL7A1Q02388 SNORA16.1-201ENST00000364597 132 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 RPL30P3-201ENST00000424262 333 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 AC087190.1-201ENST00000484462 480 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 AC021146.7-201ENST00000509604 775 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.08□□□□□ -2.24
COL7A1Q02388 TRAV28-201ENST00000557548 323 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.08□□□□□ -2.24
COL7A1Q02388 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC1.08□□□□□ -2.24
COL7A1Q02388 AC112191.3-201ENST00000604371 277 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC1.08□□□□□ -2.24
COL7A1Q02388 MCTS2P-201ENST00000394552 546 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.08□□□□□ -2.24
COL7A1Q02388 AIMP1P2-201ENST00000425294 312 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 DPPA2P1-201ENST00000428060 556 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 AC005534.2-201ENST00000431047 433 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.08□□□□□ -2.24
COL7A1Q02388 RPS29P29-201ENST00000456396 171 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 AC092902.1-201ENST00000486999 259 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 C1GALT1P2-201ENST00000510813 1104 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 RNU6-405P-201ENST00000516637 110 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 RNU6-467P-201ENST00000517027 110 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC1.08□□□□□ -2.24
COL7A1Q02388 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.08□□□□□ -2.24
COL7A1Q02388 AC008133.2-201ENST00000624540 351 ntBASIC1.08□□□□□ -2.24
COL7A1Q02388 VTRNA1-1-201ENST00000363120 99 ntBASIC1.07□□□□□ -2.24
COL7A1Q02388 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.07□□□□□ -2.24
COL7A1Q02388 HMGN2P35-201ENST00000412164 270 ntBASIC1.07□□□□□ -2.24
COL7A1Q02388 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.07□□□□□ -2.24
COL7A1Q02388 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.07□□□□□ -2.24
COL7A1Q02388 AC022790.1-201ENST00000522872 204 ntBASIC1.07□□□□□ -2.24
COL7A1Q02388 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
COL7A1Q02388 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.07□□□□□ -2.24
COL7A1Q02388 AC048347.1-201ENST00000624621 427 ntBASIC1.07□□□□□ -2.24
COL7A1Q02388 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
COL7A1Q02388 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
COL7A1Q02388 SNORA70.7-201ENST00000384159 133 ntBASIC1.07□□□□□ -2.24
COL7A1Q02388 AC092638.1-201ENST00000411966 1275 ntBASIC1.07□□□□□ -2.24
COL7A1Q02388 RPL35AP22-201ENST00000436855 335 ntBASIC1.07□□□□□ -2.24
COL7A1Q02388 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC1.07□□□□□ -2.24
COL7A1Q02388 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.07□□□□□ -2.24
COL7A1Q02388 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.07□□□□□ -2.24
COL7A1Q02388 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.07□□□□□ -2.24
COL7A1Q02388 AGL-204ENST00000370161 6923 ntTSL 5 BASIC1.07□□□□□ -2.24
COL7A1Q02388 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms