Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC109464.2-201ENST00000510242 943 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC116353.3-201ENST00000511215 249 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 MTND2P32-201ENST00000521584 1038 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 CR383656.7-201ENST00000548164 174 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 NBEAP1-201ENST00000554452 979 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AP000787.2-201ENST00000604432 568 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 AL731566.2-201ENST00000618971 317 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AL596245.1-201ENST00000618994 362 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AL445264.1-201ENST00000621719 171 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC090772.4-201ENST00000623599 362 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC2.57□□□□□ -2
CCDC54Q8NEL0 OR4G11P-202ENST00000642116 1414 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 CUL1P1-201ENST00000509510 2425 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC097714.1-201ENST00000511272 1647 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC138915.1-201ENST00000565427 1685 ntBASIC2.57□□□□□ -2
CCDC54Q8NEL0 AC009812.4-201ENST00000569134 1805 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 Y_RNA.311-201ENST00000365068 96 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 RNU6-83P-201ENST00000384568 112 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 RPS15AP38-201ENST00000413110 372 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AL096701.2-201ENST00000416920 238 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 TIMM9P2-201ENST00000419324 266 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.56□□□□□ -2
CCDC54Q8NEL0 AL158156.1-201ENST00000422509 473 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 HMGN2P30-201ENST00000423237 256 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC019178.2-201ENST00000423595 505 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 BX119904.4-201ENST00000424402 301 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 USP9YP24-201ENST00000434374 697 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 RPS25P9-201ENST00000435591 252 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 MUPP-201ENST00000438111 566 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 MTND5P14-201ENST00000441481 1267 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 USP9YP17-201ENST00000444617 696 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 RAC1P7-201ENST00000445367 377 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 MTCO2P25-201ENST00000447065 681 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 PTENP1-201ENST00000447117 1215 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 PRDX3P3-201ENST00000447765 522 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC097493.1-201ENST00000463958 372 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AP001025.2-201ENST00000490908 477 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 OR2A20P-203ENST00000498397 1268 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC010625.1-201ENST00000511296 403 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 PSMA2P1-201ENST00000526365 646 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.56□□□□□ -2
CCDC54Q8NEL0 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 AL512347.1-201ENST00000566420 503 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC034105.4-201ENST00000568304 277 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 OR4K7P-201ENST00000580232 945 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 MIR3158-1-201ENST00000583596 81 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC083760.1-201ENST00000589621 670 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC106900.2-201ENST00000604994 317 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AL450336.1-201ENST00000605180 586 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC027449.1-201ENST00000608890 407 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC007318.2-201ENST00000620999 243 ntBASIC2.56□□□□□ -2
CCDC54Q8NEL0 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.56□□□□□ -2
CCDC54Q8NEL0 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC54Q8NEL0 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC54Q8NEL0 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.56□□□□□ -2
CCDC54Q8NEL0 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC54Q8NEL0 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC54Q8NEL0 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC54Q8NEL0 RNU1-35P-201ENST00000362782 153 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 Y_RNA.126-201ENST00000363382 111 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 SNORA71.1-201ENST00000364523 117 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 RNA5SP267-201ENST00000364893 126 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 Y_RNA.465-201ENST00000384293 102 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 RNU6-1122P-201ENST00000384449 107 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 MIR7-3-201ENST00000384898 110 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 MIR513B-201ENST00000385136 84 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 MIR134-201ENST00000385258 73 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 RNA5SP252-201ENST00000391131 119 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 RPS4XP3-201ENST00000398541 413 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AL139095.1-201ENST00000404326 391 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AL356131.1-201ENST00000405826 414 ntBASIC2.55□□□□□ -2
CCDC54Q8NEL0 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC2.55□□□□□ -2
CCDC54Q8NEL0 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms