Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL589765.3-201ENST00000446084 462 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 IFNWP4-201ENST00000453148 294 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC234775.1-201ENST00000454247 670 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC233279.1-201ENST00000455300 423 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 RNU6-329P-201ENST00000459618 107 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA4Q00056 AC007547.1-201ENST00000462177 490 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 ENSA-211ENST00000503345 793 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA4Q00056 HMGN1P13-201ENST00000505795 138 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA4Q00056 RNA5SP464-201ENST00000516251 108 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 RNA5SP503-201ENST00000517047 117 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC008694.2-201ENST00000517591 306 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA4Q00056 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA4Q00056 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA4Q00056 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA4Q00056 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA4Q00056 AC068446.3-201ENST00000555285 382 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 MIR4703-201ENST00000577728 79 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 MIR4277-201ENST00000578298 84 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 MIR4742-201ENST00000581069 85 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA4Q00056 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA4Q00056 BPIFA4P-203ENST00000603168 689 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC012443.1-201ENST00000605605 231 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 Z98200.1-201ENST00000607298 470 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 SNORD91B-202ENST00000608459 222 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AL603758.1-201ENST00000618654 241 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 C2orf27A-204ENST00000623058 969 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC091905.2-201ENST00000623143 306 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA4Q00056 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA4Q00056 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA4Q00056 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA4Q00056 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA4Q00056 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA4Q00056 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA4Q00056 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA4Q00056 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA4Q00056 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 GHR-202ENST00000357703 4316 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 GHR-213ENST00000622294 4312 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA4Q00056 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA4Q00056 RNU6-179P-201ENST00000363350 107 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 RNU6-960P-201ENST00000364056 120 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 SNORD115-7-201ENST00000365306 82 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 Y_RNA.460-201ENST00000384255 102 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 MIR195-201ENST00000385194 87 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AL606923.1-201ENST00000406616 190 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 RNU2-29P-201ENST00000410423 189 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 RPL21P24-201ENST00000413752 448 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA4Q00056 BEND7P1-201ENST00000422058 457 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 ANAPC1P1-201ENST00000426186 2145 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC016712.1-201ENST00000431088 378 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA4Q00056 CKS1BP5-201ENST00000434172 273 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA4Q00056 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA4Q00056 RPL23AP52-201ENST00000439311 478 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA4Q00056 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA4Q00056 PPIAP3-201ENST00000450588 505 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AL590639.1-201ENST00000456484 337 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 RNU7-180P-201ENST00000459240 63 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 RPL35AP15-201ENST00000468042 339 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.72□□□□□ -1.81
HOXA4Q00056 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA4Q00056 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA4Q00056 RNU6-1038P-201ENST00000516516 104 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 IGHVIII-2-1-201ENST00000518843 291 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA4Q00056 AC103783.1-201ENST00000520506 373 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 HMGN1P28-201ENST00000521340 364 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 TRAV8-5-201ENST00000537369 341 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.72□□□□□ -1.81
HOXA4Q00056 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.72□□□□□ -1.81
HOXA4Q00056 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.72□□□□□ -1.81
HOXA4Q00056 AC026464.5-201ENST00000562497 722 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC233702.9-201ENST00000581528 203 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
HOXA4Q00056 MIR4424-201ENST00000585257 86 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC006254.3-201ENST00000603353 884 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA4Q00056 uc_338.5-201ENST00000611839 155 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 TUG1_2.1-201ENST00000614234 87 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC004696.1-201ENST00000614345 607 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 AC025034.2-201ENST00000623264 286 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC243312.2-201ENST00000623340 601 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 AC011944.2-201ENST00000624440 683 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 U6.114-201ENST00000636407 96 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms